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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7st2:A (2.9) BS01 rna ? GO:0002181 ... P0A7M9 34903725
    2 7st2:B (2.9) BS01 rna ? GO:0000027 ... P0A7N4 34903725
    3 7st2:C (2.9) BS01 rna ? GO:0000027 ... P0A7N9 34903725
    4 7st2:D (2.9) BS01 rna ? GO:0002181 ... P0A7P5 34903725
    5 7st2:E (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 34903725
    6 7st2:F (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 34903725
    7 7st2:G (2.9) BS01 rna ? GO:0000028 ... P0A7V0 34903725
    8 7st2:H (2.9) BS01 rna ? GO:0003676 ... P0A7V3 34903725
    9 7st2:I (2.9) BS01 rna ? GO:0000028 ... P0A7V8 34903725
    10 7st2:J (2.9) BS01 rna ? GO:0000028 ... P0A7W1 34903725
    11 7st2:K (2.9) BS01 rna ? GO:0003735 ... P02358 34903725
    12 7st2:L (2.9) BS01 rna ? GO:0003723 ... P02359 34903725
    13 7st2:L (2.9) BS02 rna ? GO:0003723 ... P02359 34903725
    14 7st2:L (2.9) BS03 rna ? GO:0003723 ... P02359 34903725
    15 7st2:M (2.9) BS01 rna ? GO:0000028 ... P0A7W7 34903725
    16 7st2:N (2.9) BS01 rna ? GO:0000049 ... P0A7X3 34903725
    17 7st2:N (2.9) BS02 rna ? GO:0000049 ... P0A7X3 34903725
    18 7st2:O (2.9) BS01 rna ? GO:0000049 ... P0A7R5 34903725
    19 7st2:P (2.9) BS01 rna ? GO:0002181 ... P0A7R9 34903725
    20 7st2:Q (2.9) BS01 rna ? GO:0000049 ... P0A7S3 34903725
    21 7st2:R (2.9) BS01 rna ? GO:0000049 ... P0A7S9 34903725
    22 7st2:R (2.9) BS02 rna ? GO:0000049 ... P0A7S9 34903725
    23 7st2:S (2.9) BS01 rna ? GO:0000028 ... P0AG59 34903725
    24 7st2:T (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 34903725
    25 7st2:T (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 34903725
    26 7st2:U (2.9) BS01 rna ? GO:0000028 ... P0A7T3 34903725
    27 7st2:V (2.9) BS01 rna ? GO:0000028 ... P0AG63 34903725
    28 7st2:W (2.9) BS01 rna ? GO:0003735 ... P0A7T7 34903725
    29 7st2:X (2.9) BS01 rna ? GO:0003723 ... P0A7U3 34903725
    30 7st2:Y (2.9) BS01 rna ? GO:0000028 ... P0A7U7 34903725
    31 7st2:Z (2.9) BS01 rna ? GO:0000028 ... P68679 34903725
    32 7st2:Z (2.9) BS02 rna ? GO:0000028 ... P68679 34903725
    33 7st2:a (2.9) BS01 rna ? GO:0000027 ... P0A7L0 34903725
    34 7st2:b (2.9) BS01 rna ? GO:0000027 ... P60422 34903725
    35 7st2:b (2.9) BS02 rna ? GO:0000027 ... P60422 34903725
    36 7st2:c (2.9) BS01 rna ? GO:0000027 ... P60438 34903725
    37 7st2:d (2.9) BS01 rna ? GO:0001070 ... P60723 34903725
    38 7st2:e (2.9) BS01 rna ? GO:0000027 ... P62399 34903725
    39 7st2:e (2.9) BS02 rna ? GO:0000027 ... P62399 34903725
    40 7st2:e (2.9) BS03 rna ? GO:0000027 ... P62399 34903725
    41 7st2:f (2.9) BS01 rna ? GO:0000027 ... P0AG55 34903725
    42 7st2:g (2.9) BS01 rna ? GO:0002181 ... P0A7R1 34903725
    43 7st2:h (2.9) BS01 rna ? GO:0003735 ... P0A7J3 34903725
    44 7st2:i (2.9) BS01 rna ? GO:0000027 ... P0A7J7 34903725
    45 7st2:j (2.9) BS01 rna ? GO:0002181 ... P0AA10 34903725
    46 7st2:k (2.9) BS01 rna ? GO:0002181 ... P0ADY3 34903725
    47 7st2:k (2.9) BS02 rna ? GO:0002181 ... P0ADY3 34903725
    48 7st2:l (2.9) BS01 rna ? GO:0002181 ... P02413 34903725
    49 7st2:m (2.9) BS01 rna ? GO:0000027 ... P0ADY7 34903725
    50 7st2:m (2.9) BS02 rna ? GO:0000027 ... P0ADY7 34903725
    51 7st2:n (2.9) BS01 rna ? GO:0000027 ... P0AG44 34903725
    52 7st2:o (2.9) BS01 rna ? GO:0002181 ... P0C018 34903725
    53 7st2:o (2.9) BS02 rna ? GO:0002181 ... P0C018 34903725
    54 7st2:p (2.9) BS01 rna ? GO:0000027 ... P0A7K6 34903725
    55 7st2:p (2.9) BS02 rna ? GO:0000027 ... P0A7K6 34903725
    56 7st2:q (2.9) BS01 rna ? GO:0000027 ... P0A7L3 34903725
    57 7st2:r (2.9) BS01 rna ? GO:0002181 ... P0AG48 34903725
    58 7st2:s (2.9) BS01 rna ? GO:0002181 ... P61175 34903725
    59 7st2:t (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 34903725
    60 7st2:u (2.9) BS01 rna ? GO:0000027 ... P60624 34903725
    61 7st2:v (2.9) BS01 rna ? GO:0000027 ... P68919 34903725
    62 7st2:w (2.9) BS01 rna ? GO:0003735 ... P0A7L8 34903725
    63 7st2:w (2.9) BS02 rna ? GO:0003735 ... P0A7L8 34903725
    64 7st2:x (2.9) BS01 rna ? GO:0000027 ... P0A7M2 34903725
    65 7st2:y (2.9) BS01 rna ? GO:0000027 ... P0A7M6 34903725
    66 7st2:z (2.9) BS01 rna ? GO:0000027 ... P0AG51 34903725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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