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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 215 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7sqc:1A (3.8) BS01 ADP 2.7.4.3 GO:0004017 ... A0A2K3D425 35578023
    2 7sqc:1A (3.8) BS02 ANP 2.7.4.3 GO:0004017 ... A0A2K3D425 35578023
    3 7sqc:1B (3.8) BS01 ADP 2.7.4.3 GO:0004017 ... A0A2K3D425 35578023
    4 7sqc:1B (3.8) BS02 ANP 2.7.4.3 GO:0004017 ... A0A2K3D425 35578023
    5 7sqc:1C (3.8) BS01 ADP 2.7.4.3 GO:0004017 ... A0A2K3D425 35578023
    6 7sqc:1C (3.8) BS02 ANP 2.7.4.3 GO:0004017 ... A0A2K3D425 35578023
    7 7sqc:1D (3.8) BS01 ADP 2.7.4.3 GO:0004017 ... A0A2K3D425 35578023
    8 7sqc:1D (3.8) BS02 ANP 2.7.4.3 GO:0004017 ... A0A2K3D425 35578023
    9 7sqc:C0 (3.8) BS01 ANP 2.7.4.3 GO:0004017 ... Q6J4H1 35578023
    10 7sqc:C1 (3.8) BS01 ANP 2.7.4.3 GO:0004017 ... Q6J4H1 35578023
    11 7sqc:C2 (3.8) BS01 ANP 2.7.4.3 GO:0004017 ... Q6J4H1 35578023
    12 7sqc:C3 (3.8) BS01 ANP 2.7.4.3 GO:0004017 ... Q6J4H1 35578023
    13 7sqc:NB (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    14 7sqc:NC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    15 7sqc:ND (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    16 7sqc:NE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    17 7sqc:NF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    18 7sqc:NG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    19 7sqc:NH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    20 7sqc:NI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    21 7sqc:NJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    22 7sqc:NJ (3.8) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    23 7sqc:NK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    24 7sqc:NL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    25 7sqc:NM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    26 7sqc:NN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    27 7sqc:NO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    28 7sqc:OC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    29 7sqc:OD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    30 7sqc:OE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    31 7sqc:OF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    32 7sqc:OF (3.8) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    33 7sqc:OG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    34 7sqc:OH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    35 7sqc:OI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    36 7sqc:OJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    37 7sqc:OK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    38 7sqc:OL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    39 7sqc:OM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    40 7sqc:ON (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    41 7sqc:OO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    42 7sqc:OP (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    43 7sqc:OQ (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    44 7sqc:PC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    45 7sqc:PD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    46 7sqc:PE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    47 7sqc:PF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    48 7sqc:PG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    49 7sqc:PH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    50 7sqc:PI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    51 7sqc:PJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    52 7sqc:PK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    53 7sqc:PL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    54 7sqc:PM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    55 7sqc:PN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    56 7sqc:PO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    57 7sqc:PP (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    58 7sqc:PQ (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    59 7sqc:QC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    60 7sqc:QD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    61 7sqc:QE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    62 7sqc:QF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    63 7sqc:QG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    64 7sqc:QH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    65 7sqc:QI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    66 7sqc:QJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    67 7sqc:QK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    68 7sqc:QL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    69 7sqc:QM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    70 7sqc:QN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    71 7sqc:QO (3.8) BS01 GTP ? GO:0003924 ... P04690 35578023
    72 7sqc:QO (3.8) BS02 GDP ? GO:0003924 ... P04690 35578023
    73 7sqc:QP (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    74 7sqc:QQ (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    75 7sqc:RC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    76 7sqc:RD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    77 7sqc:RE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    78 7sqc:RF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    79 7sqc:RG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    80 7sqc:RH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    81 7sqc:RI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    82 7sqc:RJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    83 7sqc:RK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    84 7sqc:RL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    85 7sqc:RM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    86 7sqc:RN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    87 7sqc:RO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    88 7sqc:RP (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    89 7sqc:SB (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    90 7sqc:SC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    91 7sqc:SD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    92 7sqc:SE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    93 7sqc:SF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    94 7sqc:SG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    95 7sqc:SH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    96 7sqc:SI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    97 7sqc:SJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    98 7sqc:SK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    99 7sqc:SL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    100 7sqc:SM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    101 7sqc:SN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    102 7sqc:SO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    103 7sqc:SP (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    104 7sqc:TB (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    105 7sqc:TC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    106 7sqc:TD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    107 7sqc:TE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    108 7sqc:TF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    109 7sqc:TG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    110 7sqc:TH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    111 7sqc:TI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    112 7sqc:TJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    113 7sqc:TK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    114 7sqc:TL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    115 7sqc:TM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    116 7sqc:TN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    117 7sqc:TO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    118 7sqc:TP (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    119 7sqc:UB (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    120 7sqc:UC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    121 7sqc:UD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    122 7sqc:UE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    123 7sqc:UF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    124 7sqc:UG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    125 7sqc:UH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    126 7sqc:UI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    127 7sqc:UJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    128 7sqc:UJ (3.8) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    129 7sqc:UK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    130 7sqc:UL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    131 7sqc:UM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    132 7sqc:UN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    133 7sqc:UO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    134 7sqc:UP (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    135 7sqc:VB (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    136 7sqc:VC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    137 7sqc:VD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    138 7sqc:VE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    139 7sqc:VF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    140 7sqc:VF (3.8) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    141 7sqc:VG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    142 7sqc:VH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    143 7sqc:VI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    144 7sqc:VJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    145 7sqc:VK (3.8) BS01 GTP ? GO:0003924 ... P04690 35578023
    146 7sqc:VK (3.8) BS02 GDP ? GO:0003924 ... P04690 35578023
    147 7sqc:VL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    148 7sqc:VM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    149 7sqc:VN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    150 7sqc:VN (3.8) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    151 7sqc:VO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    152 7sqc:VP (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    153 7sqc:WA (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    154 7sqc:WB (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    155 7sqc:WC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    156 7sqc:WD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    157 7sqc:WE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    158 7sqc:WF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    159 7sqc:WG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    160 7sqc:WH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    161 7sqc:WI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    162 7sqc:WJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    163 7sqc:WK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    164 7sqc:WL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    165 7sqc:WM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    166 7sqc:WN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    167 7sqc:WO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    168 7sqc:XA (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    169 7sqc:XB (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    170 7sqc:XC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    171 7sqc:XD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    172 7sqc:XE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    173 7sqc:XF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    174 7sqc:XG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    175 7sqc:XH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    176 7sqc:XI (3.8) BS01 GTP ? GO:0003924 ... P04690 35578023
    177 7sqc:XI (3.8) BS02 GDP ? GO:0003924 ... P04690 35578023
    178 7sqc:XJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    179 7sqc:XK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    180 7sqc:XL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    181 7sqc:XM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    182 7sqc:XN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    183 7sqc:XO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    184 7sqc:YB (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    185 7sqc:YC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    186 7sqc:YD (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    187 7sqc:YE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    188 7sqc:YF (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    189 7sqc:YG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    190 7sqc:YH (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    191 7sqc:YI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    192 7sqc:YJ (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    193 7sqc:YJ (3.8) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    194 7sqc:YK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    195 7sqc:YL (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    196 7sqc:YM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    197 7sqc:YN (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    198 7sqc:YO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    199 7sqc:YP (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    200 7sqc:ZB (3.8) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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