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BioLiP
Download all results in tab-seperated text for 157 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7som:AA (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    2 7som:AB (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    3 7som:AC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    4 7som:AD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    5 7som:AE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    6 7som:AF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    7 7som:AG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    8 7som:AH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    9 7som:AI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    10 7som:AJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    11 7som:AK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    12 7som:AL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    13 7som:BA (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    14 7som:BB (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    15 7som:BC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    16 7som:BD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    17 7som:BE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    18 7som:BF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    19 7som:BG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    20 7som:BH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    21 7som:BH (3.7) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    22 7som:BI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    23 7som:BJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    24 7som:BK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    25 7som:BL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    26 7som:CA (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    27 7som:CB (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    28 7som:CB (3.7) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    29 7som:CC (3.7) BS01 GTP ? GO:0003924 ... P04690 35578023
    30 7som:CC (3.7) BS02 GDP ? GO:0003924 ... P04690 35578023
    31 7som:CD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    32 7som:CE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    33 7som:CF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    34 7som:CG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    35 7som:CH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    36 7som:CI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    37 7som:CJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    38 7som:CK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    39 7som:DB (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    40 7som:DC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    41 7som:DD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    42 7som:DE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    43 7som:DF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    44 7som:DG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    45 7som:DH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    46 7som:DI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    47 7som:DJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    48 7som:DK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    49 7som:DL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    50 7som:EA (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    51 7som:EB (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    52 7som:EC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    53 7som:ED (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    54 7som:EE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    55 7som:EF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    56 7som:EG (3.7) BS01 GTP ? GO:0003924 ... P04690 35578023
    57 7som:EG (3.7) BS02 GDP ? GO:0003924 ... P04690 35578023
    58 7som:EH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    59 7som:EI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    60 7som:EJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    61 7som:EK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    62 7som:EL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    63 7som:FA (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    64 7som:FB (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    65 7som:FC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    66 7som:FD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    67 7som:FE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    68 7som:FF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    69 7som:FG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    70 7som:FH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    71 7som:FI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    72 7som:FJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    73 7som:FK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    74 7som:FL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    75 7som:GC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    76 7som:GD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    77 7som:GE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    78 7som:GF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    79 7som:GG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    80 7som:GH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    81 7som:GI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    82 7som:GJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    83 7som:GK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    84 7som:GL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    85 7som:GM (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    86 7som:HC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    87 7som:HD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    88 7som:HD (3.7) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    89 7som:HE (3.7) BS01 GTP ? GO:0003924 ... P04690 35578023
    90 7som:HE (3.7) BS02 GDP ? GO:0003924 ... P04690 35578023
    91 7som:HF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    92 7som:HG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    93 7som:HH (3.7) BS01 MG 3.6.5.- GO:0005200 ... P09204 35578023
    94 7som:HH (3.7) BS02 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    95 7som:HI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    96 7som:HJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    97 7som:HK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    98 7som:HL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    99 7som:HM (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    100 7som:IC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    101 7som:ID (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    102 7som:IE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    103 7som:IF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    104 7som:IG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    105 7som:IH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    106 7som:II (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    107 7som:IJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    108 7som:IK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    109 7som:IL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    110 7som:IM (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    111 7som:JB (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    112 7som:JC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    113 7som:JD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    114 7som:JE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    115 7som:JF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    116 7som:JG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    117 7som:JH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    118 7som:JI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    119 7som:JJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    120 7som:JJ (3.7) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    121 7som:JK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    122 7som:JL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    123 7som:JM (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    124 7som:KB (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    125 7som:KC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    126 7som:KD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    127 7som:KE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    128 7som:KF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    129 7som:KG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    130 7som:KH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    131 7som:KI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    132 7som:KJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    133 7som:KK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    134 7som:KL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    135 7som:LB (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    136 7som:LC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    137 7som:LD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    138 7som:LD (3.7) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    139 7som:LE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    140 7som:LF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    141 7som:LG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    142 7som:LH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    143 7som:LI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    144 7som:LJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    145 7som:LK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    146 7som:LL (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    147 7som:MB (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    148 7som:MC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    149 7som:MD (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    150 7som:ME (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    151 7som:MF (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    152 7som:MG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    153 7som:MH (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    154 7som:MI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    155 7som:MJ (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    156 7som:MK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    157 7som:ML (3.7) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578023
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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