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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7sfr:0 (2.6) BS01 rna ? GO:0003735 ... P9WH99 36827973
    2 7sfr:1 (2.6) BS01 rna ? GO:0003735 ... P9WH95 36827973
    3 7sfr:1 (2.6) BS02 ZN ? GO:0003735 ... P9WH95 36827973
    4 7sfr:2 (2.6) BS01 rna ? GO:0003735 ... P9WH93 36827973
    5 7sfr:3 (2.6) BS01 rna ? GO:0003735 ... P9WH91 36827973
    6 7sfr:4 (2.6) BS01 rna ? GO:0003735 ... P9WH89 36827973
    7 7sfr:4 (2.6) BS02 ZN ? GO:0003735 ... P9WH89 36827973
    8 7sfr:6 (2.6) BS01 rna ? GO:0003735 ... P9WHA1 36827973
    9 7sfr:6 (2.6) BS02 rna ? GO:0003735 ... P9WHA1 36827973
    10 7sfr:C (2.6) BS01 rna ? GO:0002181 ... P9WHA5 36827973
    11 7sfr:C (2.6) BS02 MG ? GO:0002181 ... P9WHA5 36827973
    12 7sfr:C (2.6) BS03 MG ? GO:0002181 ... P9WHA5 36827973
    13 7sfr:D (2.6) BS01 rna ? GO:0003735 ... P9WH87 36827973
    14 7sfr:E (2.6) BS01 rna ? GO:0003735 ... P9WH85 36827973
    15 7sfr:E (2.6) BS02 WDP ? GO:0003735 ... P9WH85 36827973
    16 7sfr:F (2.6) BS01 rna ? GO:0000049 ... P9WH83 36827973
    17 7sfr:F (2.6) BS02 rna ? GO:0000049 ... P9WH83 36827973
    18 7sfr:G (2.6) BS01 rna ? GO:0002181 ... P9WH81 36827973
    19 7sfr:H (2.6) BS01 rna ? GO:0003735 ... P9WH79 36827973
    20 7sfr:J (2.6) BS01 rna ? GO:0003729 ... A0A0T9D5H2 36827973
    21 7sfr:K (2.6) BS01 rna ? GO:0003735 ... P9WHD9 36827973
    22 7sfr:K (2.6) BS02 rna ? GO:0003735 ... P9WHD9 36827973
    23 7sfr:L (2.6) BS01 rna ? GO:0003735 ... P9WHD7 36827973
    24 7sfr:M (2.6) BS01 rna ? GO:0000049 ... P9WHD5 36827973
    25 7sfr:N (2.6) BS01 rna ? GO:0003735 ... P9WHD3 36827973
    26 7sfr:O (2.6) BS01 rna ? GO:0003735 ... P9WHD1 36827973
    27 7sfr:O (2.6) BS02 rna ? GO:0003735 ... P9WHD1 36827973
    28 7sfr:P (2.6) BS01 rna ? GO:0003735 ... P9WHC9 36827973
    29 7sfr:P (2.6) BS02 rna ? GO:0003735 ... P9WHC9 36827973
    30 7sfr:Q (2.6) BS01 rna ? GO:0000027 ... P9WHC5 36827973
    31 7sfr:R (2.6) BS01 rna ? GO:0003723 ... P9WHC3 36827973
    32 7sfr:S (2.6) BS01 rna ? GO:0003735 ... P9WHC1 36827973
    33 7sfr:T (2.6) BS01 rna ? GO:0000027 ... P9WHB9 36827973
    34 7sfr:U (2.6) BS01 rna ? GO:0003723 ... P9WHB7 36827973
    35 7sfr:V (2.6) BS01 rna ? GO:0003723 ... P9WHB5 36827973
    36 7sfr:W (2.6) BS01 rna ? GO:0003735 ... P9WHB3 36827973
    37 7sfr:X (2.6) BS01 rna ? GO:0003735 ... P0DV54 36827973
    38 7sfr:X (2.6) BS02 ZN ? GO:0003735 ... P0DV54 36827973
    39 7sfr:Y (2.6) BS01 rna ? GO:0003735 ... P9WHA7 36827973
    40 7sfr:Z (2.6) BS01 rna ? GO:0003735 ... P9WHA3 36827973
    41 7sfr:Z (2.6) BS02 rna ? GO:0003735 ... P9WHA3 36827973
    42 7sfr:c (2.6) BS01 rna ? GO:0003676 ... P9WH37 36827973
    43 7sfr:d (2.6) BS01 rna ? GO:0003723 ... P9WH35 36827973
    44 7sfr:e (2.6) BS01 rna ? GO:0003723 ... P9WH33 36827973
    45 7sfr:f (2.6) BS01 rna ? GO:0003735 ... P9WH31 36827973
    46 7sfr:g (2.6) BS01 rna ? GO:0000028 ... P9WH29 36827973
    47 7sfr:h (2.6) BS01 rna ? GO:0003735 ... P9WH27 36827973
    48 7sfr:i (2.6) BS01 rna ? GO:0003723 ... P9WH25 36827973
    49 7sfr:j (2.6) BS01 rna ? GO:0000049 ... P9WH67 36827973
    50 7sfr:k (2.6) BS01 rna ? GO:0003735 ... P9WH65 36827973
    51 7sfr:l (2.6) BS01 rna ? GO:0000049 ... P9WH63 36827973
    52 7sfr:m (2.6) BS01 rna ? GO:0000049 ... P9WH61 36827973
    53 7sfr:n (2.6) BS01 rna ? GO:0003735 ... P9WH57 36827973
    54 7sfr:n (2.6) BS02 ZN ? GO:0003735 ... P9WH57 36827973
    55 7sfr:o (2.6) BS01 rna ? GO:0003735 ... P9WH55 36827973
    56 7sfr:o (2.6) BS02 rna ? GO:0003735 ... P9WH55 36827973
    57 7sfr:p (2.6) BS01 rna ? GO:0003735 ... P9WH53 36827973
    58 7sfr:q (2.6) BS01 rna ? GO:0003735 ... P9WH51 36827973
    59 7sfr:r (2.6) BS01 rna ? GO:0003735 ... P9WH49 36827973
    60 7sfr:r (2.6) BS02 ZN ? GO:0003735 ... P9WH49 36827973
    61 7sfr:s (2.6) BS01 rna ? GO:0000028 ... P9WH45 36827973
    62 7sfr:t (2.6) BS01 rna ? GO:0003723 ... P9WH41 36827973
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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