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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ryf:0 (2.65) BS01 rna ? GO:0003735 ... A0A7U4DFF9 35100868
    2 7ryf:1 (2.65) BS01 rna ? GO:0003735 ... N/A 35100868
    3 7ryf:2 (2.65) BS01 rna ? GO:0003735 ... B7I693 35100868
    4 7ryf:3 (2.65) BS01 rna ? GO:0003735 ... B7IA18 35100868
    5 7ryf:3 (2.65) BS02 ZN ? GO:0003735 ... B7IA18 35100868
    6 7ryf:C (2.65) BS01 rna ? GO:0002181 ... B7IA36 35100868
    7 7ryf:D (2.65) BS01 rna ? GO:0003735 ... B7IA39 35100868
    8 7ryf:E (2.65) BS01 rna ? GO:0003735 ... B7IA38 35100868
    9 7ryf:F (2.65) BS01 rna ? GO:0000049 ... B7IA27 35100868
    10 7ryf:F (2.65) BS02 rna ? GO:0000049 ... B7IA27 35100868
    11 7ryf:F (2.65) BS03 rna ? GO:0000049 ... B7IA27 35100868
    12 7ryf:G (2.65) BS01 rna ? GO:0002181 ... B7IA24 35100868
    13 7ryf:H (2.65) BS01 rna ? GO:0003735 ... B7IBC3 35100868
    14 7ryf:I (2.65) BS01 rna ? GO:0003729 ... B7I9B0 35100868
    15 7ryf:J (2.65) BS01 rna ? GO:0003735 ... N8SHC6 35100868
    16 7ryf:K (2.65) BS01 rna ? GO:0003735 ... B7IA20 35100868
    17 7ryf:L (2.65) BS01 rna ? GO:0000049 ... B7IA32 35100868
    18 7ryf:L (2.65) BS02 rna ? GO:0000049 ... B7IA32 35100868
    19 7ryf:M (2.65) BS01 rna ? GO:0003735 ... B7IA13 35100868
    20 7ryf:N (2.65) BS01 rna ? GO:0003735 ... B7IA23 35100868
    21 7ryf:N (2.65) BS02 rna ? GO:0003735 ... B7IA23 35100868
    22 7ryf:O (2.65) BS01 rna ? GO:0003735 ... B7IAS9 35100868
    23 7ryf:O (2.65) BS02 rna ? GO:0003735 ... B7IAS9 35100868
    24 7ryf:P (2.65) BS01 rna ? GO:0000027 ... V5VGC9 35100868
    25 7ryf:Q (2.65) BS01 rna ? GO:0003723 ... B7I6V9 35100868
    26 7ryf:R (2.65) BS01 rna ? GO:0003735 ... A0A009I821 35100868
    27 7ryf:S (2.65) BS01 rna ? GO:0000027 ... B7IA37 35100868
    28 7ryf:T (2.65) BS01 rna ? GO:0003723 ... B7IA28 35100868
    29 7ryf:U (2.65) BS01 rna ? GO:0003723 ... B7I7B6 35100868
    30 7ryf:V (2.65) BS01 rna ? GO:0003735 ... B7I6V8 35100868
    31 7ryf:V (2.65) BS02 rna ? GO:0003735 ... B7I6V8 35100868
    32 7ryf:W (2.65) BS01 rna ? GO:0003735 ... N/A 35100868
    33 7ryf:X (2.65) BS01 rna ? GO:0003735 ... B7IA31 35100868
    34 7ryf:Y (2.65) BS01 rna N/A GO:0003735 ... N/A 35100868
    35 7ryf:Z (2.65) BS01 rna ? GO:0003735 ... B7I7A4 35100868
    36 7ryf:b (2.65) BS01 rna ? GO:0003735 ... V5VBC2 35100868
    37 7ryf:c (2.65) BS01 rna ? GO:0003676 ... V5V9N0 35100868
    38 7ryf:d (2.65) BS01 rna ? GO:0003723 ... B7IA15 35100868
    39 7ryf:e (2.65) BS01 rna ? GO:0003723 ... B7IA22 35100868
    40 7ryf:f (2.65) BS01 rna ? GO:0003735 ... B7IBC1 35100868
    41 7ryf:g (2.65) BS01 rna ? GO:0000028 ... B7I7S0 35100868
    42 7ryf:h (2.65) BS01 rna ? GO:0003735 ... B7IA25 35100868
    43 7ryf:i (2.65) BS01 rna ? GO:0003723 ... V5VBA5 35100868
    44 7ryf:j (2.65) BS01 rna N/A GO:0003723 ... N/A 35100868
    45 7ryf:k (2.65) BS01 rna ? GO:0003735 ... A0A4R0F9S8 35100868
    46 7ryf:l (2.65) BS01 rna ? GO:0000049 ... B7I7R9 35100868
    47 7ryf:m (2.65) BS01 rna ? GO:0000049 ... B7IA17 35100868
    48 7ryf:n (2.65) BS01 rna ? GO:0003735 ... B7IA26 35100868
    49 7ryf:o (2.65) BS01 rna ? GO:0003735 ... B7I3U0 35100868
    50 7ryf:o (2.65) BS02 rna ? GO:0003735 ... B7I3U0 35100868
    51 7ryf:p (2.65) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 35100868
    52 7ryf:q (2.65) BS01 rna ? GO:0003735 ... B7IA30 35100868
    53 7ryf:r (2.65) BS01 rna N/A GO:0003735 ... N/A 35100868
    54 7ryf:s (2.65) BS01 rna ? GO:0000028 ... B7IA35 35100868
    55 7ryf:t (2.65) BS01 rna ? GO:0003723 ... B7I5N9 35100868
    56 7ryf:u (2.65) BS01 rna ? GO:0003735 ... A0A0Q7FMS9 35100868
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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