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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rl5:A (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    2 7rl5:A (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    3 7rl5:A (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    4 7rl5:A (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    5 7rl5:B (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    6 7rl5:B (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    7 7rl5:B (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    8 7rl5:B (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    9 7rl5:C (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    10 7rl5:C (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    11 7rl5:C (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    12 7rl5:C (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    13 7rl5:D (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    14 7rl5:D (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    15 7rl5:D (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    16 7rl5:D (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    17 7rl5:E (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    18 7rl5:E (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    19 7rl5:E (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    20 7rl5:E (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    21 7rl5:L (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    22 7rl5:L (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    23 7rl5:L (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    24 7rl5:L (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    25 7rl5:M (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    26 7rl5:M (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    27 7rl5:M (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    28 7rl5:M (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    29 7rl5:O (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    30 7rl5:O (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    31 7rl5:O (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    32 7rl5:O (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    33 7rl5:P (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    34 7rl5:P (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    35 7rl5:P (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    36 7rl5:P (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    37 7rl5:Q (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    38 7rl5:Q (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    39 7rl5:Q (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    40 7rl5:Q (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    41 7rl5:R (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    42 7rl5:R (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    43 7rl5:R (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    44 7rl5:R (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    45 7rl5:S (3.8) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    46 7rl5:S (3.8) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    47 7rl5:S (3.8) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    48 7rl5:S (3.8) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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