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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rh7:E (3.0) BS01 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    2 7rh7:E (3.0) BS02 9XX 7.1.1.8 GO:0008121 ... A0R052 34590581
    3 7rh7:E (3.0) BS03 HEM 7.1.1.8 GO:0008121 ... A0R052 34590581
    4 7rh7:E (3.0) BS04 HEM 7.1.1.8 GO:0008121 ... A0R052 34590581
    5 7rh7:E (3.0) BS05 HUU 7.1.1.8 GO:0008121 ... A0R052 34590581
    6 7rh7:E (3.0) BS06 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    7 7rh7:E (3.0) BS07 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    8 7rh7:E (3.0) BS08 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    9 7rh7:E (3.0) BS09 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    10 7rh7:F (3.0) BS01 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    11 7rh7:F (3.0) BS02 9XX 7.1.1.8 GO:0008121 ... A0R052 34590581
    12 7rh7:F (3.0) BS03 HEM 7.1.1.8 GO:0008121 ... A0R052 34590581
    13 7rh7:F (3.0) BS04 HEM 7.1.1.8 GO:0008121 ... A0R052 34590581
    14 7rh7:F (3.0) BS05 HUU 7.1.1.8 GO:0008121 ... A0R052 34590581
    15 7rh7:F (3.0) BS06 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    16 7rh7:F (3.0) BS07 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    17 7rh7:F (3.0) BS08 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    18 7rh7:F (3.0) BS09 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    19 7rh7:I (3.0) BS01 MQ9 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    20 7rh7:I (3.0) BS02 HEC 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    21 7rh7:I (3.0) BS03 HEC 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    22 7rh7:I (3.0) BS04 9YF 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    23 7rh7:I (3.0) BS05 MQ9 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    24 7rh7:J (3.0) BS01 9Y0 ? GO:0016020 ... A0QVH4 34590581
    25 7rh7:J (3.0) BS02 9YF ? GO:0016020 ... A0QVH4 34590581
    26 7rh7:K (3.0) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    27 7rh7:K (3.0) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    28 7rh7:L (3.0) BS01 CU N/A GO:0004129 ... N/A 34590581
    29 7rh7:L (3.0) BS02 HEA N/A GO:0004129 ... N/A 34590581
    30 7rh7:L (3.0) BS03 HEA N/A GO:0004129 ... N/A 34590581
    31 7rh7:L (3.0) BS04 9Y0 N/A GO:0004129 ... N/A 34590581
    32 7rh7:L (3.0) BS05 MQ9 N/A GO:0004129 ... N/A 34590581
    33 7rh7:L (3.0) BS06 9XX N/A GO:0004129 ... N/A 34590581
    34 7rh7:M (3.0) BS01 MQ9 ? GO:0005886 ... I7GD61 34590581
    35 7rh7:M (3.0) BS02 9YF ? GO:0005886 ... I7GD61 34590581
    36 7rh7:M (3.0) BS03 FES ? GO:0005886 ... I7GD61 34590581
    37 7rh7:M (3.0) BS04 9YF ? GO:0005886 ... I7GD61 34590581
    38 7rh7:M (3.0) BS05 9YF ? GO:0005886 ... I7GD61 34590581
    39 7rh7:O (3.0) BS01 MQ9 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    40 7rh7:O (3.0) BS02 HEC 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    41 7rh7:O (3.0) BS03 HEC 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    42 7rh7:O (3.0) BS04 9YF 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    43 7rh7:O (3.0) BS05 MQ9 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    44 7rh7:P (3.0) BS01 9XX ? GO:0016020 ... A0QVH4 34590581
    45 7rh7:P (3.0) BS02 9Y0 ? GO:0016020 ... A0QVH4 34590581
    46 7rh7:P (3.0) BS03 9YF ? GO:0016020 ... A0QVH4 34590581
    47 7rh7:Q (3.0) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    48 7rh7:Q (3.0) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    49 7rh7:R (3.0) BS01 9XX N/A GO:0004129 ... N/A 34590581
    50 7rh7:R (3.0) BS02 CU N/A GO:0004129 ... N/A 34590581
    51 7rh7:R (3.0) BS03 HEA N/A GO:0004129 ... N/A 34590581
    52 7rh7:R (3.0) BS04 HEA N/A GO:0004129 ... N/A 34590581
    53 7rh7:R (3.0) BS05 9Y0 N/A GO:0004129 ... N/A 34590581
    54 7rh7:R (3.0) BS06 MQ9 N/A GO:0004129 ... N/A 34590581
    55 7rh7:R (3.0) BS07 9Y0 N/A GO:0004129 ... N/A 34590581
    56 7rh7:S (3.0) BS01 9Y0 7.1.1.9 GO:0004129 ... A0R049 34590581
    57 7rh7:T (3.0) BS01 9Y0 7.1.1.9 GO:0004129 ... A0R056 34590581
    58 7rh7:T (3.0) BS02 MQ9 7.1.1.9 GO:0004129 ... A0R056 34590581
    59 7rh7:T (3.0) BS03 9YF 7.1.1.9 GO:0004129 ... A0R056 34590581
    60 7rh7:W (3.0) BS01 9Y0 ? N/A A0R562 34590581
    61 7rh7:W (3.0) BS02 HEC ? N/A A0R562 34590581
    62 7rh7:X (3.0) BS01 9Y0 7.1.1.9 GO:0004129 ... A0R049 34590581
    63 7rh7:Y (3.0) BS01 MQ9 ? GO:0005886 ... I7GD61 34590581
    64 7rh7:Y (3.0) BS02 FES ? GO:0005886 ... I7GD61 34590581
    65 7rh7:Y (3.0) BS03 9YF ? GO:0005886 ... I7GD61 34590581
    66 7rh7:Y (3.0) BS04 9YF ? GO:0005886 ... I7GD61 34590581
    67 7rh7:Z (3.0) BS01 9Y0 7.1.1.9 GO:0004129 ... A0R056 34590581
    68 7rh7:Z (3.0) BS02 MQ9 7.1.1.9 GO:0004129 ... A0R056 34590581
    69 7rh7:Z (3.0) BS03 9YF 7.1.1.9 GO:0004129 ... A0R056 34590581
    70 7rh7:c (3.0) BS01 HEC ? N/A A0R562 34590581
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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