Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rh5:E (3.0) BS01 HEM 7.1.1.8 GO:0008121 ... A0R052 34590581
    2 7rh5:E (3.0) BS02 HEM 7.1.1.8 GO:0008121 ... A0R052 34590581
    3 7rh5:E (3.0) BS03 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    4 7rh5:E (3.0) BS04 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    5 7rh5:E (3.0) BS05 9XX 7.1.1.8 GO:0008121 ... A0R052 34590581
    6 7rh5:E (3.0) BS06 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    7 7rh5:E (3.0) BS07 9Y0 7.1.1.8 GO:0008121 ... A0R052 34590581
    8 7rh5:E (3.0) BS08 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    9 7rh5:E (3.0) BS09 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    10 7rh5:E (3.0) BS10 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    11 7rh5:F (3.0) BS01 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    12 7rh5:F (3.0) BS02 HEM 7.1.1.8 GO:0008121 ... A0R052 34590581
    13 7rh5:F (3.0) BS03 HEM 7.1.1.8 GO:0008121 ... A0R052 34590581
    14 7rh5:F (3.0) BS04 9Y0 7.1.1.8 GO:0008121 ... A0R052 34590581
    15 7rh5:F (3.0) BS05 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    16 7rh5:F (3.0) BS06 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    17 7rh5:F (3.0) BS07 MQ9 7.1.1.8 GO:0008121 ... A0R052 34590581
    18 7rh5:F (3.0) BS08 9XX 7.1.1.8 GO:0008121 ... A0R052 34590581
    19 7rh5:F (3.0) BS09 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    20 7rh5:F (3.0) BS10 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    21 7rh5:I (3.0) BS01 MQ9 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    22 7rh5:I (3.0) BS02 HEC 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    23 7rh5:I (3.0) BS03 HEC 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    24 7rh5:I (3.0) BS04 MQ9 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    25 7rh5:I (3.0) BS05 9YF 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    26 7rh5:J (3.0) BS01 9Y0 ? GO:0016020 ... A0QVH4 34590581
    27 7rh5:J (3.0) BS02 9Y0 ? GO:0016020 ... A0QVH4 34590581
    28 7rh5:J (3.0) BS03 9YF ? GO:0016020 ... A0QVH4 34590581
    29 7rh5:K (3.0) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    30 7rh5:K (3.0) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    31 7rh5:L (3.0) BS01 CU N/A GO:0004129 ... N/A 34590581
    32 7rh5:L (3.0) BS02 HEA N/A GO:0004129 ... N/A 34590581
    33 7rh5:L (3.0) BS03 HEA N/A GO:0004129 ... N/A 34590581
    34 7rh5:L (3.0) BS04 9Y0 N/A GO:0004129 ... N/A 34590581
    35 7rh5:L (3.0) BS05 MQ9 N/A GO:0004129 ... N/A 34590581
    36 7rh5:L (3.0) BS06 9Y0 N/A GO:0004129 ... N/A 34590581
    37 7rh5:L (3.0) BS07 9XX N/A GO:0004129 ... N/A 34590581
    38 7rh5:M (3.0) BS01 MQ9 ? GO:0005886 ... I7GD61 34590581
    39 7rh5:M (3.0) BS02 9YF ? GO:0005886 ... I7GD61 34590581
    40 7rh5:M (3.0) BS03 9YF ? GO:0005886 ... I7GD61 34590581
    41 7rh5:M (3.0) BS04 9YF ? GO:0005886 ... I7GD61 34590581
    42 7rh5:M (3.0) BS05 FES ? GO:0005886 ... I7GD61 34590581
    43 7rh5:O (3.0) BS01 MQ9 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    44 7rh5:O (3.0) BS02 MQ9 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    45 7rh5:O (3.0) BS03 HEC 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    46 7rh5:O (3.0) BS04 HEC 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    47 7rh5:O (3.0) BS05 9YF 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    48 7rh5:P (3.0) BS01 9Y0 ? GO:0016020 ... A0QVH4 34590581
    49 7rh5:P (3.0) BS02 9Y0 ? GO:0016020 ... A0QVH4 34590581
    50 7rh5:P (3.0) BS03 9YF ? GO:0016020 ... A0QVH4 34590581
    51 7rh5:Q (3.0) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    52 7rh5:Q (3.0) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    53 7rh5:R (3.0) BS01 CU N/A GO:0004129 ... N/A 34590581
    54 7rh5:R (3.0) BS02 HEA N/A GO:0004129 ... N/A 34590581
    55 7rh5:R (3.0) BS03 HEA N/A GO:0004129 ... N/A 34590581
    56 7rh5:R (3.0) BS04 MQ9 N/A GO:0004129 ... N/A 34590581
    57 7rh5:R (3.0) BS05 9Y0 N/A GO:0004129 ... N/A 34590581
    58 7rh5:R (3.0) BS06 9Y0 N/A GO:0004129 ... N/A 34590581
    59 7rh5:S (3.0) BS01 9Y0 7.1.1.9 GO:0004129 ... A0R049 34590581
    60 7rh5:T (3.0) BS01 MQ9 7.1.1.9 GO:0004129 ... A0R056 34590581
    61 7rh5:T (3.0) BS02 9Y0 7.1.1.9 GO:0004129 ... A0R056 34590581
    62 7rh5:T (3.0) BS03 9YF 7.1.1.9 GO:0004129 ... A0R056 34590581
    63 7rh5:W (3.0) BS01 9YF ? N/A A0R562 34590581
    64 7rh5:X (3.0) BS01 9Y0 7.1.1.9 GO:0004129 ... A0R049 34590581
    65 7rh5:Y (3.0) BS01 MQ9 ? GO:0005886 ... I7GD61 34590581
    66 7rh5:Y (3.0) BS02 FES ? GO:0005886 ... I7GD61 34590581
    67 7rh5:Y (3.0) BS03 9YF ? GO:0005886 ... I7GD61 34590581
    68 7rh5:Y (3.0) BS04 9YF ? GO:0005886 ... I7GD61 34590581
    69 7rh5:Y (3.0) BS05 9YF ? GO:0005886 ... I7GD61 34590581
    70 7rh5:Z (3.0) BS01 9Y0 7.1.1.9 GO:0004129 ... A0R056 34590581
    71 7rh5:Z (3.0) BS02 MQ9 7.1.1.9 GO:0004129 ... A0R056 34590581
    72 7rh5:Z (3.0) BS03 9YF 7.1.1.9 GO:0004129 ... A0R056 34590581
    73 7rh5:c (3.0) BS01 9YF ? N/A A0R562 34590581
    74 7rh5:c (3.0) BS02 HEC ? N/A A0R562 34590581
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218