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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7r72:8 (3.07) BS01 rna ? GO:0003729 ... P39744 36482249
    2 7r72:I (3.07) BS01 rna ? GO:0003682 ... Q07896 36482249
    3 7r72:P (3.07) BS01 rna ? GO:0000448 ... P05740 36482249
    4 7r72:R (3.07) BS01 rna ? GO:0002181 ... P0CX82 36482249
    5 7r72:U (3.07) BS01 rna ? GO:0002181 ... P05749 36482249
    6 7r72:X (3.07) BS01 rna ? GO:0000027 ... P04456 36482249
    7 7r72:X (3.07) BS02 rna ? GO:0000027 ... P04456 36482249
    8 7r72:X (3.07) BS03 peptide ? GO:0000027 ... P04456 36482249
    9 7r72:Z (3.07) BS01 rna ? GO:0002181 ... P0C2H6 36482249
    10 7r72:b (3.07) BS01 rna ? GO:0000054 ... Q02892 36482249
    11 7r72:c (3.07) BS01 rna ? GO:0002181 ... P14120 36482249
    12 7r72:d (3.07) BS01 rna ? GO:0002181 ... P0C2H8 36482249
    13 7r72:g (3.07) BS01 rna ? GO:0002181 ... P87262 36482249
    14 7r72:g (3.07) BS02 ZN ? GO:0002181 ... P87262 36482249
    15 7r72:k (3.07) BS01 rna ? GO:0002181 ... P49167 36482249
    16 7r72:m (3.07) BS01 rna ? GO:0006364 ... Q04660 36482249
    17 7r72:m (3.07) BS02 peptide ? GO:0006364 ... Q04660 36482249
    18 7r72:n (3.07) BS01 rna ? GO:0005730 ... P53261 36482249
    19 7r72:n (3.07) BS02 rna ? GO:0005730 ... P53261 36482249
    20 7r72:n (3.07) BS03 peptide ? GO:0005730 ... P53261 36482249
    21 7r72:p (3.07) BS01 rna ? GO:0000463 ... Q12024 36482249
    22 7r72:u (3.07) BS01 rna ? GO:0001671 ... Q07915 36482249
    23 7r72:u (3.07) BS02 peptide ? GO:0001671 ... Q07915 36482249
    24 7r72:w (3.07) BS01 rna 2.1.1.167 GO:0000451 ... P25582 36482249
    25 7r72:w (3.07) BS02 peptide 2.1.1.167 GO:0000451 ... P25582 36482249
    26 7r72:x (3.07) BS01 rna 3.6.4.13 GO:0000027 ... P25808 36482249
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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