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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qws:A (3.4) BS01 rna ? GO:0003735 ... A0A5F9D5B2 35201867
    2 7qws:B (3.4) BS01 rna ? GO:0003723 ... G1TL06 35201867
    3 7qws:C (3.4) BS01 rna ? GO:0003723 ... G1SVW5 35201867
    4 7qws:C (3.4) BS02 rna ? GO:0003723 ... G1SVW5 35201867
    5 7qws:D (3.4) BS01 rna ? GO:0000027 ... P19949 35201867
    6 7qws:D (3.4) BS02 rna ? GO:0000027 ... P19949 35201867
    7 7qws:E (3.4) BS01 rna ? GO:0000027 ... G1SKF7 35201867
    8 7qws:F (3.4) BS01 rna ? GO:0000463 ... G1SV32 35201867
    9 7qws:F (3.4) BS02 rna ? GO:0000463 ... G1SV32 35201867
    10 7qws:G (3.4) BS01 rna ? GO:0000470 ... G1STW0 35201867
    11 7qws:G (3.4) BS02 rna ? GO:0000470 ... G1STW0 35201867
    12 7qws:H (3.4) BS01 rna ? GO:0002181 ... G1SWI6 35201867
    13 7qws:I (3.4) BS01 rna ? GO:0000027 ... B7NZQ2 35201867
    14 7qws:I (3.4) BS02 rna ? GO:0000027 ... B7NZQ2 35201867
    15 7qws:J (3.4) BS01 rna ? GO:0003723 ... G1TUB8 35201867
    16 7qws:J (3.4) BS02 rna ? GO:0003723 ... G1TUB8 35201867
    17 7qws:L (3.4) BS01 rna N/A GO:0003735 ... N/A 35201867
    18 7qws:L (3.4) BS02 rna N/A GO:0003735 ... N/A 35201867
    19 7qws:M (3.4) BS01 rna ? GO:0003723 ... G1SZ12 35201867
    20 7qws:N (3.4) BS01 rna ? GO:0002181 ... G1T0C1 35201867
    21 7qws:N (3.4) BS02 rna ? GO:0002181 ... G1T0C1 35201867
    22 7qws:O (3.4) BS01 rna N/A GO:0003735 ... N/A 35201867
    23 7qws:P (3.4) BS01 rna N/A GO:0003735 ... N/A 35201867
    24 7qws:P (3.4) BS02 rna N/A GO:0003735 ... N/A 35201867
    25 7qws:Q (3.4) BS01 rna N/A GO:0003735 ... N/A 35201867
    26 7qws:R (3.4) BS01 rna ? GO:0003723 ... Q3T0W9 35201867
    27 7qws:S (3.4) BS01 rna N/A GO:0003735 ... N/A 35201867
    28 7qws:S (3.4) BS02 rna N/A GO:0003735 ... N/A 35201867
    29 7qws:T (3.4) BS01 rna ? GO:0003735 ... G1SHQ2 35201867
    30 7qws:T (3.4) BS02 rna ? GO:0003735 ... G1SHQ2 35201867
    31 7qws:U (3.4) BS01 rna N/A GO:0003735 ... N/A 35201867
    32 7qws:V (3.4) BS01 rna ? GO:0000122 ... G1T6D1 35201867
    33 7qws:W (3.4) BS01 rna ? GO:0000027 ... G1SE28 35201867
    34 7qws:X (3.4) BS01 rna ? GO:0000027 ... G1SE76 35201867
    35 7qws:X (3.4) BS02 rna ? GO:0000027 ... G1SE76 35201867
    36 7qws:Y (3.4) BS01 rna ? GO:0002181 ... G1SQH0 35201867
    37 7qws:Y (3.4) BS02 rna ? GO:0002181 ... G1SQH0 35201867
    38 7qws:Z (3.4) BS01 rna ? GO:0003735 ... G1TXF6 35201867
    39 7qws:a (3.4) BS01 rna ? GO:0003735 ... G1SNY0 35201867
    40 7qws:b (3.4) BS01 rna ? GO:0003735 ... G1SGR6 35201867
    41 7qws:c (3.4) BS01 rna ? GO:0002181 ... G1TDL2 35201867
    42 7qws:d (3.4) BS01 rna ? GO:0002181 ... G1SHG0 35201867
    43 7qws:e (3.4) BS01 rna ? GO:0003735 ... G1TUN8 35201867
    44 7qws:f (3.4) BS01 rna ? GO:0000049 ... G1SF08 35201867
    45 7qws:g (3.4) BS01 rna ? GO:0003735 ... G1TXG5 35201867
    46 7qws:g (3.4) BS02 ZN ? GO:0003735 ... G1TXG5 35201867
    47 7qws:h (3.4) BS01 rna ? GO:0000463 ... G1SIT5 35201867
    48 7qws:h (3.4) BS02 rna ? GO:0000463 ... G1SIT5 35201867
    49 7qws:i (3.4) BS01 rna ? GO:0002181 ... G1TTQ5 35201867
    50 7qws:j (3.4) BS01 rna ? GO:0003723 ... U3KPD5 35201867
    51 7qws:j (3.4) BS02 rna ? GO:0003723 ... U3KPD5 35201867
    52 7qws:j (3.4) BS03 ZN ? GO:0003723 ... U3KPD5 35201867
    53 7qws:k (3.4) BS01 rna N/A GO:0003735 ... N/A 35201867
    54 7qws:l (3.4) BS01 peptide ? GO:0003735 ... G1SYU7 35201867
    55 7qws:l (3.4) BS02 rna ? GO:0003735 ... G1SYU7 35201867
    56 7qws:l (3.4) BS03 rna ? GO:0003735 ... G1SYU7 35201867
    57 7qws:m (3.4) BS01 rna N/A GO:0003735 ... N/A 35201867
    58 7qws:m (3.4) BS02 ZN N/A GO:0003735 ... N/A 35201867
    59 7qws:o (3.4) BS01 rna ? GO:0003735 ... A0A5F9D391 35201867
    60 7qws:o (3.4) BS02 ZN ? GO:0003735 ... A0A5F9D391 35201867
    61 7qws:p (3.4) BS01 rna ? GO:0003735 ... G1SY53 35201867
    62 7qws:p (3.4) BS02 ZN ? GO:0003735 ... G1SY53 35201867
    63 7qws:r (3.4) BS01 rna ? GO:0003735 ... G1U7L1 35201867
    64 7qws:u (3.4) BS01 rna ? GO:0001701 ... G1TKK2 35201867

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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