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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qvi:A (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    2 7qvi:A (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    3 7qvi:A (3.0) BS03 CAP N/A GO:0000287 ... N/A 36227987
    4 7qvi:B (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    5 7qvi:B (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    6 7qvi:C (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    7 7qvi:C (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    8 7qvi:D (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    9 7qvi:D (3.0) BS02 CAP N/A GO:0000287 ... N/A 36227987
    10 7qvi:D (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    11 7qvi:E (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    12 7qvi:E (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    13 7qvi:E (3.0) BS03 CAP N/A GO:0000287 ... N/A 36227987
    14 7qvi:F (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    15 7qvi:F (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    16 7qvi:G (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    17 7qvi:G (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    18 7qvi:H (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    19 7qvi:H (3.0) BS02 CAP N/A GO:0000287 ... N/A 36227987
    20 7qvi:H (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    21 7qvi:I (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    22 7qvi:I (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    23 7qvi:I (3.0) BS03 CAP N/A GO:0000287 ... N/A 36227987
    24 7qvi:J (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    25 7qvi:J (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    26 7qvi:K (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    27 7qvi:K (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    28 7qvi:L (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    29 7qvi:L (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    30 7qvi:M (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    31 7qvi:M (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    32 7qvi:M (3.0) BS03 CAP N/A GO:0000287 ... N/A 36227987
    33 7qvi:N (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    34 7qvi:N (3.0) BS02 CAP N/A GO:0000287 ... N/A 36227987
    35 7qvi:N (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    36 7qvi:O (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    37 7qvi:O (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38 7qvi:P (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    39 7qvi:P (3.0) BS02 CAP N/A GO:0000287 ... N/A 36227987
    40 7qvi:P (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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