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BioLiP Library
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qv3:0 (5.14) BS01 rna ? GO:0003735 ... O34687 35264791
    2 7qv3:1 (5.14) BS01 rna ? GO:0003735 ... P56849 35264791
    3 7qv3:2 (5.14) BS01 rna ? GO:0003735 ... P05647 35264791
    4 7qv3:3 (5.14) BS01 rna ? GO:0003735 ... P55874 35264791
    5 7qv3:4 (5.14) BS01 rna ? GO:0003735 ... P20278 35264791
    6 7qv3:6 (5.14) BS01 rna ? GO:0003735 ... Q03223 35264791
    7 7qv3:C (5.14) BS01 rna ? GO:0002181 ... P42919 35264791
    8 7qv3:D (5.14) BS01 rna ? GO:0003735 ... P42920 35264791
    9 7qv3:E (5.14) BS01 rna ? GO:0003735 ... P42921 35264791
    10 7qv3:F (5.14) BS01 rna ? GO:0000049 ... P12877 35264791
    11 7qv3:F (5.14) BS02 rna ? GO:0000049 ... P12877 35264791
    12 7qv3:F (5.14) BS03 rna ? GO:0000049 ... P12877 35264791
    13 7qv3:G (5.14) BS01 rna ? GO:0002181 ... P46898 35264791
    14 7qv3:J (5.14) BS01 rna ? GO:0003729 ... P70974 35264791
    15 7qv3:K (5.14) BS01 rna ? GO:0003735 ... P12875 35264791
    16 7qv3:K (5.14) BS02 rna ? GO:0003735 ... P12875 35264791
    17 7qv3:L (5.14) BS01 rna ? GO:0003735 ... P19946 35264791
    18 7qv3:M (5.14) BS01 rna ? GO:0000049 ... P14577 35264791
    19 7qv3:N (5.14) BS01 rna ? GO:0003735 ... P20277 35264791
    20 7qv3:O (5.14) BS01 rna ? GO:0003735 ... P46899 35264791
    21 7qv3:O (5.14) BS02 rna ? GO:0003735 ... P46899 35264791
    22 7qv3:P (5.14) BS01 rna ? GO:0003735 ... O31742 35264791
    23 7qv3:P (5.14) BS02 rna ? GO:0003735 ... O31742 35264791
    24 7qv3:Q (5.14) BS01 rna ? GO:0000027 ... P55873 35264791
    25 7qv3:R (5.14) BS01 rna ? GO:0003723 ... P26908 35264791
    26 7qv3:S (5.14) BS01 peptide ? GO:0003735 ... P42060 35264791
    27 7qv3:S (5.14) BS02 rna ? GO:0003735 ... P42060 35264791
    28 7qv3:T (5.14) BS01 rna ? GO:0000027 ... P42924 35264791
    29 7qv3:U (5.14) BS01 rna ? GO:0003677 ... P0CI78 35264791
    30 7qv3:W (5.14) BS01 rna ? GO:0003735 ... P05657 35264791
    31 7qv3:W (5.14) BS02 rna ? GO:0003735 ... P05657 35264791
    32 7qv3:X (5.14) BS01 rna ? GO:0003735 ... P37437 35264791
    33 7qv3:Y (5.14) BS01 rna ? GO:0003735 ... P12873 35264791
    34 7qv3:Z (5.14) BS01 rna ? GO:0003735 ... P19947 35264791
    35 7qv3:b (5.14) BS01 rna ? GO:0003735 ... P21478 35264791
    36 7qv3:b (5.14) BS02 rna ? GO:0003735 ... P21478 35264791
    37 7qv3:c (5.14) BS01 rna ? GO:0003676 ... P21465 35264791
    38 7qv3:d (5.14) BS01 rna ? GO:0003723 ... P21466 35264791
    39 7qv3:e (5.14) BS01 rna ? GO:0003723 ... P21467 35264791
    40 7qv3:e (5.14) BS02 rna ? GO:0003723 ... P21467 35264791
    41 7qv3:f (5.14) BS01 rna ? GO:0003735 ... P21468 35264791
    42 7qv3:g (5.14) BS01 rna ? GO:0000028 ... P21469 35264791
    43 7qv3:g (5.14) BS02 rna ? GO:0000028 ... P21469 35264791
    44 7qv3:h (5.14) BS01 rna ? GO:0003735 ... P12879 35264791
    45 7qv3:i (5.14) BS01 rna ? GO:0003723 ... P21470 35264791
    46 7qv3:j (5.14) BS01 rna ? GO:0000049 ... P21471 35264791
    47 7qv3:k (5.14) BS01 rna ? GO:0003735 ... P04969 35264791
    48 7qv3:k (5.14) BS02 rna ? GO:0003735 ... P04969 35264791
    49 7qv3:l (5.14) BS01 rna ? GO:0000049 ... P21472 35264791
    50 7qv3:m (5.14) BS01 rna ? GO:0000049 ... P20282 35264791
    51 7qv3:n (5.14) BS01 rna ? GO:0003735 ... P12878 35264791
    52 7qv3:o (5.14) BS01 rna ? GO:0003735 ... P21473 35264791
    53 7qv3:p (5.14) BS01 rna ? GO:0003735 ... P21474 35264791
    54 7qv3:q (5.14) BS01 rna ? GO:0003735 ... P12874 35264791
    55 7qv3:r (5.14) BS01 rna ? GO:0003735 ... P21475 35264791
    56 7qv3:s (5.14) BS01 rna ? GO:0000028 ... P21476 35264791
    57 7qv3:t (5.14) BS01 rna ? GO:0003723 ... P21477 35264791
    58 7qv3:u (5.14) BS01 rna ? GO:0003735 ... P37807 35264791
    59 7qv3:w (5.14) BS01 rna 3.1.-.- GO:0003677 ... P94545 35264791
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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