Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7q4k:AB (3.0) BS01 rna ? GO:0003735 ... C3TPN2 37393329
    2 7q4k:AC (3.0) BS01 rna ? GO:0000028 ... C3SQX2 37393329
    3 7q4k:AD (3.0) BS01 rna ? GO:0003723 ... C3SR62 37393329
    4 7q4k:AE (3.0) BS01 rna ? GO:0000028 ... C3SR27 37393329
    5 7q4k:AF (3.0) BS01 rna ? GO:0002181 ... P02358 37393329
    6 7q4k:AG (3.0) BS01 rna ? GO:0000028 ... P02359 37393329
    7 7q4k:AG (3.0) BS02 rna ? GO:0000028 ... P02359 37393329
    8 7q4k:AH (3.0) BS01 rna ? GO:0000028 ... C3SR12 37393329
    9 7q4k:AI (3.0) BS01 rna ? GO:0000028 ... C3SRY2 37393329
    10 7q4k:AJ (3.0) BS01 rna ? GO:0000028 ... C3SQT7 37393329
    11 7q4k:AK (3.0) BS01 rna ? GO:0000028 ... C3SR57 37393329
    12 7q4k:AL (3.0) BS01 rna ? GO:0000028 ... C3SQR7 37393329
    13 7q4k:AM (3.0) BS01 rna ? GO:0000028 ... C3SR52 37393329
    14 7q4k:AN (3.0) BS01 rna ? GO:0003735 ... C3SR07 37393329
    15 7q4k:AO (3.0) BS01 rna ? GO:0000028 ... C3SSQ7 37393329
    16 7q4k:AO (3.0) BS02 rna ? GO:0000028 ... C3SSQ7 37393329
    17 7q4k:AP (3.0) BS01 rna ? GO:0000028 ... C3SYP2 37393329
    18 7q4k:AQ (3.0) BS01 rna ? GO:0000028 ... C3SQY7 37393329
    19 7q4k:AR (3.0) BS01 rna ? GO:0000028 ... C3SFP7 37393329
    20 7q4k:AS (3.0) BS01 rna ? GO:0000028 ... C3SQW2 37393329
    21 7q4k:AT (3.0) BS01 rna ? GO:0000028 ... C3TRH7 37393329
    22 7q4k:AU (3.0) BS01 rna ? GO:0000028 ... C3STZ7 37393329
    23 7q4k:B0 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 37393329
    24 7q4k:B1 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 37393329
    25 7q4k:B2 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 37393329
    26 7q4k:B3 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 37393329
    27 7q4k:B4 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 37393329
    28 7q4k:BC (3.0) BS01 rna ? GO:0000027 ... P60422 37393329
    29 7q4k:BD (3.0) BS01 rna ? GO:0000027 ... P60438 37393329
    30 7q4k:BE (3.0) BS01 rna ? GO:0001070 ... P60723 37393329
    31 7q4k:BF (3.0) BS01 rna ? GO:0000027 ... P62399 37393329
    32 7q4k:BF (3.0) BS02 rna ? GO:0000027 ... P62399 37393329
    33 7q4k:BF (3.0) BS03 rna ? GO:0000027 ... P62399 37393329
    34 7q4k:BG (3.0) BS01 rna ? GO:0000027 ... P0AG55 37393329
    35 7q4k:BH (3.0) BS01 rna ? GO:0002181 ... P0A7R1 37393329
    36 7q4k:BI (3.0) BS01 rna N/A GO:0003735 ... N/A 37393329
    37 7q4k:BJ (3.0) BS01 rna ? GO:0002181 ... P0AA10 37393329
    38 7q4k:BK (3.0) BS01 rna ? GO:0002181 ... P0ADY3 37393329
    39 7q4k:BK (3.0) BS02 rna ? GO:0002181 ... P0ADY3 37393329
    40 7q4k:BL (3.0) BS01 rna ? GO:0002181 ... P02413 37393329
    41 7q4k:BM (3.0) BS01 rna ? GO:0000027 ... P0ADY7 37393329
    42 7q4k:BM (3.0) BS02 rna ? GO:0000027 ... P0ADY7 37393329
    43 7q4k:BN (3.0) BS01 rna ? GO:0000027 ... P0AG44 37393329
    44 7q4k:BO (3.0) BS01 rna ? GO:0002181 ... P0C018 37393329
    45 7q4k:BO (3.0) BS02 rna ? GO:0002181 ... P0C018 37393329
    46 7q4k:BP (3.0) BS01 rna ? GO:0000027 ... P0A7K6 37393329
    47 7q4k:BP (3.0) BS02 rna ? GO:0000027 ... P0A7K6 37393329
    48 7q4k:BQ (3.0) BS01 rna ? GO:0000027 ... P0A7L3 37393329
    49 7q4k:BR (3.0) BS01 rna ? GO:0002181 ... P0AG48 37393329
    50 7q4k:BS (3.0) BS01 rna ? GO:0002181 ... P61175 37393329
    51 7q4k:BT (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 37393329
    52 7q4k:BU (3.0) BS01 rna ? GO:0000027 ... P60624 37393329
    53 7q4k:BV (3.0) BS01 rna ? GO:0000027 ... P68919 37393329
    54 7q4k:BW (3.0) BS01 rna ? GO:0000027 ... P0A7L8 37393329
    55 7q4k:BW (3.0) BS02 rna ? GO:0000027 ... P0A7L8 37393329
    56 7q4k:BX (3.0) BS01 rna ? GO:0000027 ... P0A7M2 37393329
    57 7q4k:BY (3.0) BS01 rna ? GO:0000027 ... P0A7M6 37393329
    58 7q4k:BZ (3.0) BS01 rna ? GO:0000027 ... P0AG51 37393329
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218