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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7q38:A (1.65) BS01 RET ? GO:0005216 ... P02945 35422073
    2 7q38:A (1.65) BS02 AR ? GO:0005216 ... P02945 35422073
    3 7q38:A (1.65) BS03 AR ? GO:0005216 ... P02945 35422073
    4 7q38:A (1.65) BS04 AR ? GO:0005216 ... P02945 35422073
    5 7q38:A (1.65) BS05 AR ? GO:0005216 ... P02945 35422073
    6 7q38:A (1.65) BS06 AR ? GO:0005216 ... P02945 35422073
    7 7q38:A (1.65) BS07 AR ? GO:0005216 ... P02945 35422073
    8 7q38:A (1.65) BS08 AR ? GO:0005216 ... P02945 35422073
    9 7q38:A (1.65) BS09 AR ? GO:0005216 ... P02945 35422073
    10 7q38:A (1.65) BS10 AR ? GO:0005216 ... P02945 35422073
    11 7q38:A (1.65) BS11 AR ? GO:0005216 ... P02945 35422073
    12 7q38:A (1.65) BS12 AR ? GO:0005216 ... P02945 35422073
    13 7q38:A (1.65) BS13 AR ? GO:0005216 ... P02945 35422073
    14 7q38:A (1.65) BS14 AR ? GO:0005216 ... P02945 35422073
    15 7q38:A (1.65) BS15 AR ? GO:0005216 ... P02945 35422073
    16 7q38:A (1.65) BS16 AR ? GO:0005216 ... P02945 35422073
    17 7q38:A (1.65) BS17 AR ? GO:0005216 ... P02945 35422073
    18 7q38:A (1.65) BS18 AR ? GO:0005216 ... P02945 35422073
    19 7q38:A (1.65) BS19 AR ? GO:0005216 ... P02945 35422073
    20 7q38:A (1.65) BS20 AR ? GO:0005216 ... P02945 35422073
    21 7q38:A (1.65) BS21 AR ? GO:0005216 ... P02945 35422073
    22 7q38:A (1.65) BS22 AR ? GO:0005216 ... P02945 35422073
    23 7q38:A (1.65) BS23 AR ? GO:0005216 ... P02945 35422073
    24 7q38:A (1.65) BS24 AR ? GO:0005216 ... P02945 35422073
    25 7q38:A (1.65) BS25 AR ? GO:0005216 ... P02945 35422073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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