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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pnz:0 (3.09) BS01 rna ? GO:0003735 ... P82930 35676484
    2 7pnz:3 (3.09) BS01 rna ? GO:0005515 ... Q9NWT8 35676484
    3 7pnz:B (3.09) BS01 rna ? GO:0003735 ... Q9Y399 35676484
    4 7pnz:B (3.09) BS02 MG ? GO:0003735 ... Q9Y399 35676484
    5 7pnz:C (3.09) BS01 rna ? GO:0003723 ... Q96EL2 35676484
    6 7pnz:D (3.09) BS01 rna ? GO:0003723 ... P82675 35676484
    7 7pnz:E (3.09) BS01 rna ? GO:0003735 ... P82932 35676484
    8 7pnz:E (3.09) BS02 FES ? GO:0003735 ... P82932 35676484
    9 7pnz:F (3.09) BS01 rna ? GO:0000028 ... Q9Y2R9 35676484
    10 7pnz:G (3.09) BS01 rna ? GO:0003723 ... P82933 35676484
    11 7pnz:H (3.09) BS01 rna ? GO:0003674 ... P82664 35676484
    12 7pnz:I (3.09) BS01 rna ? GO:0003723 ... P82912 35676484
    13 7pnz:J (3.09) BS01 rna ? GO:0003723 ... O15235 35676484
    14 7pnz:K (3.09) BS01 rna ? GO:0003723 ... O60783 35676484
    15 7pnz:L (3.09) BS01 rna ? GO:0003723 ... P82914 35676484
    16 7pnz:L (3.09) BS02 NAD ? GO:0003723 ... P82914 35676484
    17 7pnz:M (3.09) BS01 rna ? GO:0003735 ... Q9Y3D3 35676484
    18 7pnz:M (3.09) BS02 FES ? GO:0003735 ... Q9Y3D3 35676484
    19 7pnz:N (3.09) BS01 rna ? GO:0003735 ... Q9Y2R5 35676484
    20 7pnz:O (3.09) BS01 rna ? GO:0003735 ... Q9Y676 35676484
    21 7pnz:O (3.09) BS02 ZN ? GO:0003735 ... Q9Y676 35676484
    22 7pnz:P (3.09) BS01 rna ? GO:0003735 ... Q9Y3D5 35676484
    23 7pnz:P (3.09) BS02 FES ? GO:0003735 ... Q9Y3D5 35676484
    24 7pnz:Q (3.09) BS01 rna ? GO:0003723 ... P82921 35676484
    25 7pnz:S (3.09) BS01 rna ? GO:0003723 ... Q9Y3D9 35676484
    26 7pnz:T (3.09) BS01 rna ? GO:0003735 ... P82663 35676484
    27 7pnz:T (3.09) BS02 FES ? GO:0003735 ... P82663 35676484
    28 7pnz:U (3.09) BS01 rna ? GO:0003723 ... Q9BYN8 35676484
    29 7pnz:V (3.09) BS01 rna ? GO:0000049 ... Q92552 35676484
    30 7pnz:X (3.09) BS01 rna ? GO:0003723 ... P51398 35676484
    31 7pnz:X (3.09) BS02 ATP ? GO:0003723 ... P51398 35676484
    32 7pnz:X (3.09) BS03 GDP ? GO:0003723 ... P51398 35676484
    33 7pnz:Z (3.09) BS01 rna ? GO:0003735 ... Q9Y291 35676484
    34 7pnz:a (3.09) BS01 rna ? GO:0005515 ... Q8N0V3 35676484
    35 7pnz:b (3.09) BS01 rna 2.1.1.- GO:0005515 ... A6NJ78 35676484
    36 7pnz:b (3.09) BS02 SAH 2.1.1.- GO:0005515 ... A6NJ78 35676484
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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