Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pnu:0 (3.06) BS01 rna ? GO:0003735 ... Q9JIK9 35676484
    2 7pnu:1 (3.06) BS01 rna ? GO:0003735 ... Q8BJZ4 35676484
    3 7pnu:3 (3.06) BS01 rna ? GO:0003674 ... Q9DCJ7 35676484
    4 7pnu:4 (3.06) BS01 rna ? GO:0005654 ... Q14C51 35676484
    5 7pnu:B (3.06) BS01 rna ? GO:0003735 ... Q924T2 35676484
    6 7pnu:B (3.06) BS02 MG ? GO:0003735 ... Q924T2 35676484
    7 7pnu:C (3.06) BS01 rna ? GO:0003735 ... Q9CQV5 35676484
    8 7pnu:D (3.06) BS01 rna ? GO:0003723 ... Q99N87 35676484
    9 7pnu:E (3.06) BS01 rna ? GO:0003735 ... P58064 35676484
    10 7pnu:F (3.06) BS01 rna ? GO:0003735 ... Q80X85 35676484
    11 7pnu:G (3.06) BS01 rna ? GO:0003735 ... Q9D7N3 35676484
    12 7pnu:H (3.06) BS01 rna ? GO:0003735 ... Q80ZK0 35676484
    13 7pnu:I (3.06) BS01 rna ? GO:0003735 ... Q9DCA2 35676484
    14 7pnu:J (3.06) BS01 rna ? GO:0003735 ... O35680 35676484
    15 7pnu:K (3.06) BS01 rna ? GO:0003735 ... Q9CR88 35676484
    16 7pnu:L (3.06) BS01 rna ? GO:0003735 ... Q9DC71 35676484
    17 7pnu:M (3.06) BS01 rna ? GO:0003735 ... Q9CPX7 35676484
    18 7pnu:M (3.06) BS02 FES ? GO:0003735 ... Q9CPX7 35676484
    19 7pnu:N (3.06) BS01 rna ? GO:0003735 ... Q9CQE3 35676484
    20 7pnu:O (3.06) BS01 rna ? GO:0003735 ... Q99N84 35676484
    21 7pnu:O (3.06) BS02 ZN ? GO:0003735 ... Q99N84 35676484
    22 7pnu:P (3.06) BS01 rna ? GO:0003735 ... Q8R2L5 35676484
    23 7pnu:P (3.06) BS02 FES ? GO:0003735 ... Q8R2L5 35676484
    24 7pnu:Q (3.06) BS01 rna ? GO:0003735 ... P58059 35676484
    25 7pnu:S (3.06) BS01 rna ? GO:0003735 ... Q8VE22 35676484
    26 7pnu:T (3.06) BS01 rna ? GO:0003735 ... Q9D125 35676484
    27 7pnu:T (3.06) BS02 FES ? GO:0003735 ... Q9D125 35676484
    28 7pnu:U (3.06) BS01 rna ? GO:0005654 ... Q80ZS3 35676484
    29 7pnu:V (3.06) BS01 rna ? GO:0000049 ... Q8BK72 35676484
    30 7pnu:X (3.06) BS01 rna ? GO:0005739 ... Q9ER88 35676484
    31 7pnu:X (3.06) BS02 ATP ? GO:0005739 ... Q9ER88 35676484
    32 7pnu:Z (3.06) BS01 rna ? GO:0003674 ... Q9D2R8 35676484
    33 7pnu:a (3.06) BS01 rna ? GO:0003674 ... Q6P3B9 35676484
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218