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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pet:A (9.5) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    2 7pet:A (9.5) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    3 7pet:B (9.5) BS01 dna ? GO:0000781 ... P62805 35581345
    4 7pet:B (9.5) BS02 dna ? GO:0000781 ... P62805 35581345
    5 7pet:C (9.5) BS01 dna ? GO:0000786 ... P04908 35581345
    6 7pet:C (9.5) BS02 dna ? GO:0000786 ... P04908 35581345
    7 7pet:D (9.5) BS01 dna ? GO:0000786 ... O60814 35581345
    8 7pet:D (9.5) BS02 dna ? GO:0000786 ... O60814 35581345
    9 7pet:E (9.5) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    10 7pet:E (9.5) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    11 7pet:F (9.5) BS01 dna ? GO:0000781 ... P62805 35581345
    12 7pet:F (9.5) BS02 dna ? GO:0000781 ... P62805 35581345
    13 7pet:G (9.5) BS01 dna ? GO:0000786 ... P04908 35581345
    14 7pet:G (9.5) BS02 dna ? GO:0000786 ... P04908 35581345
    15 7pet:H (9.5) BS01 dna ? GO:0000786 ... O60814 35581345
    16 7pet:H (9.5) BS02 dna ? GO:0000786 ... O60814 35581345
    17 7pet:K (9.5) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    18 7pet:K (9.5) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    19 7pet:L (9.5) BS01 dna ? GO:0000781 ... P62805 35581345
    20 7pet:L (9.5) BS02 dna ? GO:0000781 ... P62805 35581345
    21 7pet:M (9.5) BS01 dna ? GO:0000786 ... P04908 35581345
    22 7pet:M (9.5) BS02 dna ? GO:0000786 ... P04908 35581345
    23 7pet:N (9.5) BS01 dna ? GO:0000786 ... O60814 35581345
    24 7pet:N (9.5) BS02 dna ? GO:0000786 ... O60814 35581345
    25 7pet:O (9.5) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    26 7pet:O (9.5) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    27 7pet:P (9.5) BS01 dna ? GO:0000781 ... P62805 35581345
    28 7pet:P (9.5) BS02 dna ? GO:0000781 ... P62805 35581345
    29 7pet:Q (9.5) BS01 dna ? GO:0000786 ... P04908 35581345
    30 7pet:Q (9.5) BS02 dna ? GO:0000786 ... P04908 35581345
    31 7pet:R (9.5) BS01 dna ? GO:0000786 ... O60814 35581345
    32 7pet:R (9.5) BS02 dna ? GO:0000786 ... O60814 35581345
    33 7pet:a (9.5) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    34 7pet:a (9.5) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    35 7pet:b (9.5) BS01 dna ? GO:0000781 ... P62805 35581345
    36 7pet:b (9.5) BS02 dna ? GO:0000781 ... P62805 35581345
    37 7pet:c (9.5) BS01 dna ? GO:0000786 ... P04908 35581345
    38 7pet:c (9.5) BS02 dna ? GO:0000786 ... P04908 35581345
    39 7pet:d (9.5) BS01 dna ? GO:0000786 ... O60814 35581345
    40 7pet:d (9.5) BS02 dna ? GO:0000786 ... O60814 35581345
    41 7pet:e (9.5) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    42 7pet:e (9.5) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    43 7pet:f (9.5) BS01 dna ? GO:0000781 ... P62805 35581345
    44 7pet:f (9.5) BS02 dna ? GO:0000781 ... P62805 35581345
    45 7pet:g (9.5) BS01 dna ? GO:0000786 ... P04908 35581345
    46 7pet:g (9.5) BS02 dna ? GO:0000786 ... P04908 35581345
    47 7pet:h (9.5) BS01 dna ? GO:0000786 ... O60814 35581345
    48 7pet:h (9.5) BS02 dna ? GO:0000786 ... O60814 35581345
    49 7pet:k (9.5) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    50 7pet:k (9.5) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    51 7pet:l (9.5) BS01 dna ? GO:0000781 ... P62805 35581345
    52 7pet:l (9.5) BS02 dna ? GO:0000781 ... P62805 35581345
    53 7pet:m (9.5) BS01 dna ? GO:0000786 ... P04908 35581345
    54 7pet:m (9.5) BS02 dna ? GO:0000786 ... P04908 35581345
    55 7pet:n (9.5) BS01 dna ? GO:0000786 ... O60814 35581345
    56 7pet:n (9.5) BS02 dna ? GO:0000786 ... O60814 35581345
    57 7pet:o (9.5) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    58 7pet:o (9.5) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    59 7pet:p (9.5) BS01 dna ? GO:0000781 ... P62805 35581345
    60 7pet:p (9.5) BS02 dna ? GO:0000781 ... P62805 35581345
    61 7pet:q (9.5) BS01 dna ? GO:0000786 ... P04908 35581345
    62 7pet:q (9.5) BS02 dna ? GO:0000786 ... P04908 35581345
    63 7pet:r (9.5) BS01 dna ? GO:0000786 ... O60814 35581345
    64 7pet:r (9.5) BS02 dna ? GO:0000786 ... O60814 35581345
    65 7pet:s (9.5) BS01 dna ? GO:0000122 ... P10412 35581345
    66 7pet:s (9.5) BS02 dna ? GO:0000122 ... P10412 35581345
    67 7pet:u (9.5) BS01 dna ? GO:0000122 ... P10412 35581345
    68 7pet:u (9.5) BS02 dna ? GO:0000122 ... P10412 35581345
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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