Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pas:0 (16.0) BS01 rna ? GO:0003735 ... P78006 36171285
    2 7pas:1 (16.0) BS01 rna ? GO:0003735 ... P75447 36171285
    3 7pas:2 (16.0) BS01 rna ? GO:0003735 ... P52864 36171285
    4 7pas:A (16.0) BS01 rna ? GO:0003735 ... P75560 36171285
    5 7pas:B (16.0) BS01 rna ? GO:0003676 ... P41205 36171285
    6 7pas:C (16.0) BS01 rna ? GO:0003723 ... P46775 36171285
    7 7pas:D (16.0) BS01 rna ? GO:0003723 ... Q50301 36171285
    8 7pas:E (16.0) BS01 rna ? GO:0003735 ... P75543 36171285
    9 7pas:F (16.0) BS01 rna ? GO:0000028 ... P75545 36171285
    10 7pas:G (16.0) BS01 rna ? GO:0003735 ... Q50304 36171285
    11 7pas:H (16.0) BS01 rna ? GO:0003723 ... P75179 36171285
    12 7pas:I (16.0) BS01 rna ? GO:0000049 ... P75581 36171285
    13 7pas:J (16.0) BS01 rna ? GO:0003735 ... Q50296 36171285
    14 7pas:K (16.0) BS01 rna ? GO:0000049 ... P75546 36171285
    15 7pas:L (16.0) BS01 rna ? GO:0000049 ... Q50297 36171285
    16 7pas:M (16.0) BS01 rna ? GO:0003735 ... Q50305 36171285
    17 7pas:N (16.0) BS01 rna ? GO:0003735 ... P75173 36171285
    18 7pas:N (16.0) BS02 rna ? GO:0003735 ... P75173 36171285
    19 7pas:O (16.0) BS01 rna ? GO:0003735 ... P75131 36171285
    20 7pas:P (16.0) BS01 rna ? GO:0003735 ... Q50309 36171285
    21 7pas:Q (16.0) BS01 rna ? GO:0003735 ... P75541 36171285
    22 7pas:R (16.0) BS01 rna ? GO:0000028 ... P75576 36171285
    23 7pas:S (16.0) BS01 rna ? GO:0003723 ... P75237 36171285
    24 7pas:T (16.0) BS01 rna ? GO:0003735 ... P57079 36171285
    25 7pas:a (16.0) BS01 rna ? GO:0002181 ... P75577 36171285
    26 7pas:a (16.0) BS02 rna ? GO:0002181 ... P75577 36171285
    27 7pas:b (16.0) BS01 rna ? GO:0003735 ... P75580 36171285
    28 7pas:c (16.0) BS01 rna ? GO:0003735 ... P75579 36171285
    29 7pas:d (16.0) BS01 rna ? GO:0000049 ... Q50306 36171285
    30 7pas:d (16.0) BS02 rna ? GO:0000049 ... Q50306 36171285
    31 7pas:e (16.0) BS01 rna ? GO:0003735 ... Q50303 36171285
    32 7pas:f (16.0) BS01 rna ? GO:0003735 ... P75540 36171285
    33 7pas:g (16.0) BS01 rna ? GO:0003735 ... P75240 36171285
    34 7pas:h (16.0) BS01 rna ? GO:0003735 ... P75550 36171285
    35 7pas:i (16.0) BS01 rna ? GO:0003729 ... P75178 36171285
    36 7pas:j (16.0) BS01 rna ? GO:0003735 ... Q50308 36171285
    37 7pas:k (16.0) BS01 rna ? GO:0003735 ... Q50300 36171285
    38 7pas:l (16.0) BS01 rna ? GO:0000049 ... P41204 36171285
    39 7pas:l (16.0) BS02 rna ? GO:0000049 ... P41204 36171285
    40 7pas:m (16.0) BS01 rna ? GO:0003735 ... Q59547 36171285
    41 7pas:n (16.0) BS01 rna ? GO:0003735 ... Q50302 36171285
    42 7pas:n (16.0) BS02 rna ? GO:0003735 ... Q50302 36171285
    43 7pas:o (16.0) BS01 rna ? GO:0003735 ... P75133 36171285
    44 7pas:o (16.0) BS02 rna ? GO:0003735 ... P75133 36171285
    45 7pas:p (16.0) BS01 rna ? GO:0000027 ... P78023 36171285
    46 7pas:q (16.0) BS01 rna ? GO:0003723 ... P78026 36171285
    47 7pas:r (16.0) BS01 rna ? GO:0003735 ... P75575 36171285
    48 7pas:s (16.0) BS01 rna ? GO:0003735 ... P75578 36171285
    49 7pas:t (16.0) BS01 rna ? GO:0003723 ... Q50307 36171285
    50 7pas:u (16.0) BS01 rna ? GO:0003735 ... P75458 36171285
    51 7pas:v (16.0) BS01 rna ? GO:0003735 ... P75171 36171285
    52 7pas:w (16.0) BS01 rna ? GO:0003735 ... Q50310 36171285
    53 7pas:y (16.0) BS01 rna ? GO:0003735 ... P75238 36171285
    54 7pas:z (16.0) BS01 rna ? GO:0003735 ... P78015 36171285
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218