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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pal:0 (4.7) BS01 rna ? GO:0003735 ... P78006 36171285
    2 7pal:1 (4.7) BS01 rna ? GO:0003735 ... P75447 36171285
    3 7pal:2 (4.7) BS01 rna ? GO:0003735 ... P52864 36171285
    4 7pal:A (4.7) BS01 rna ? GO:0003735 ... P75560 36171285
    5 7pal:B (4.7) BS01 rna ? GO:0003676 ... P41205 36171285
    6 7pal:C (4.7) BS01 rna ? GO:0003723 ... P46775 36171285
    7 7pal:D (4.7) BS01 rna ? GO:0003723 ... Q50301 36171285
    8 7pal:E (4.7) BS01 rna ? GO:0003735 ... P75543 36171285
    9 7pal:F (4.7) BS01 rna ? GO:0000028 ... P75545 36171285
    10 7pal:G (4.7) BS01 rna ? GO:0003735 ... Q50304 36171285
    11 7pal:H (4.7) BS01 rna ? GO:0003723 ... P75179 36171285
    12 7pal:I (4.7) BS01 rna ? GO:0000049 ... P75581 36171285
    13 7pal:J (4.7) BS01 rna ? GO:0003735 ... Q50296 36171285
    14 7pal:K (4.7) BS01 rna ? GO:0000049 ... P75546 36171285
    15 7pal:L (4.7) BS01 rna ? GO:0000049 ... Q50297 36171285
    16 7pal:L (4.7) BS02 rna ? GO:0000049 ... Q50297 36171285
    17 7pal:L (4.7) BS03 rna ? GO:0000049 ... Q50297 36171285
    18 7pal:M (4.7) BS01 rna ? GO:0003735 ... Q50305 36171285
    19 7pal:N (4.7) BS01 rna ? GO:0003735 ... P75173 36171285
    20 7pal:N (4.7) BS02 rna ? GO:0003735 ... P75173 36171285
    21 7pal:O (4.7) BS01 rna ? GO:0003735 ... P75131 36171285
    22 7pal:P (4.7) BS01 rna ? GO:0003735 ... Q50309 36171285
    23 7pal:Q (4.7) BS01 rna ? GO:0003735 ... P75541 36171285
    24 7pal:R (4.7) BS01 rna ? GO:0000028 ... P75576 36171285
    25 7pal:S (4.7) BS01 rna ? GO:0003723 ... P75237 36171285
    26 7pal:T (4.7) BS01 rna ? GO:0003735 ... P57079 36171285
    27 7pal:a (4.7) BS01 rna ? GO:0002181 ... P75577 36171285
    28 7pal:b (4.7) BS01 rna ? GO:0003735 ... P75580 36171285
    29 7pal:c (4.7) BS01 rna ? GO:0003735 ... P75579 36171285
    30 7pal:d (4.7) BS01 rna ? GO:0000049 ... Q50306 36171285
    31 7pal:d (4.7) BS02 rna ? GO:0000049 ... Q50306 36171285
    32 7pal:e (4.7) BS01 rna ? GO:0003735 ... Q50303 36171285
    33 7pal:f (4.7) BS01 rna ? GO:0003735 ... P75540 36171285
    34 7pal:g (4.7) BS01 rna ? GO:0003735 ... P75240 36171285
    35 7pal:h (4.7) BS01 rna ? GO:0003735 ... P75550 36171285
    36 7pal:i (4.7) BS01 rna ? GO:0003729 ... P75178 36171285
    37 7pal:j (4.7) BS01 rna ? GO:0003735 ... Q50308 36171285
    38 7pal:j (4.7) BS02 rna ? GO:0003735 ... Q50308 36171285
    39 7pal:k (4.7) BS01 rna ? GO:0003735 ... Q50300 36171285
    40 7pal:l (4.7) BS01 rna ? GO:0000049 ... P41204 36171285
    41 7pal:l (4.7) BS02 rna ? GO:0000049 ... P41204 36171285
    42 7pal:m (4.7) BS01 rna ? GO:0003735 ... Q59547 36171285
    43 7pal:n (4.7) BS01 rna ? GO:0003735 ... Q50302 36171285
    44 7pal:n (4.7) BS02 rna ? GO:0003735 ... Q50302 36171285
    45 7pal:o (4.7) BS01 rna ? GO:0003735 ... P75133 36171285
    46 7pal:o (4.7) BS02 rna ? GO:0003735 ... P75133 36171285
    47 7pal:p (4.7) BS01 rna ? GO:0000027 ... P78023 36171285
    48 7pal:q (4.7) BS01 rna ? GO:0003723 ... P78026 36171285
    49 7pal:r (4.7) BS01 rna ? GO:0003735 ... P75575 36171285
    50 7pal:s (4.7) BS01 rna ? GO:0003735 ... P75578 36171285
    51 7pal:t (4.7) BS01 rna ? GO:0003723 ... Q50307 36171285
    52 7pal:u (4.7) BS01 rna ? GO:0003735 ... P75458 36171285
    53 7pal:u (4.7) BS02 rna ? GO:0003735 ... P75458 36171285
    54 7pal:v (4.7) BS01 rna ? GO:0003735 ... P75171 36171285
    55 7pal:w (4.7) BS01 rna ? GO:0003735 ... Q50310 36171285
    56 7pal:y (4.7) BS01 rna ? GO:0003735 ... P75238 36171285
    57 7pal:z (4.7) BS01 rna ? GO:0003735 ... P78015 36171285
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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