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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7p7q:0 (2.4) BS01 rna N/A GO:0005524 ... N/A 35387982
    2 7p7q:0 (2.4) BS02 rna N/A GO:0005524 ... N/A 35387982
    3 7p7q:0 (2.4) BS03 ATP N/A GO:0005524 ... N/A 35387982
    4 7p7q:0 (2.4) BS04 ATP N/A GO:0005524 ... N/A 35387982
    5 7p7q:0 (2.4) BS05 MG N/A GO:0005524 ... N/A 35387982
    6 7p7q:0 (2.4) BS06 MG N/A GO:0005524 ... N/A 35387982
    7 7p7q:1 (2.4) BS01 rna ? GO:0003735 ... Q839F6 35387982
    8 7p7q:2 (2.4) BS01 rna ? GO:0003735 ... Q839E6 35387982
    9 7p7q:2 (2.4) BS02 rna ? GO:0003735 ... Q839E6 35387982
    10 7p7q:3 (2.4) BS01 rna ? GO:0003735 ... Q836E3 35387982
    11 7p7q:3 (2.4) BS02 rna ? GO:0003735 ... Q836E3 35387982
    12 7p7q:4 (2.4) BS01 rna ? GO:0003735 ... Q836R0 35387982
    13 7p7q:4 (2.4) BS02 ZN ? GO:0003735 ... Q836R0 35387982
    14 7p7q:5 (2.4) BS01 rna ? GO:0003735 ... P59628 35387982
    15 7p7q:5 (2.4) BS02 ZN ? GO:0003735 ... P59628 35387982
    16 7p7q:6 (2.4) BS01 rna ? GO:0003735 ... Q82YU9 35387982
    17 7p7q:7 (2.4) BS01 rna ? GO:0003735 ... Q837C8 35387982
    18 7p7q:8 (2.4) BS01 rna ? GO:0003735 ... Q839E1 35387982
    19 7p7q:8 (2.4) BS02 ZN ? GO:0003735 ... Q839E1 35387982
    20 7p7q:F (2.4) BS01 rna ? GO:0000049 ... Q830Q6 35387982
    21 7p7q:G (2.4) BS01 rna ? GO:0002181 ... Q839G1 35387982
    22 7p7q:H (2.4) BS01 rna ? GO:0003735 ... Q839G4 35387982
    23 7p7q:I (2.4) BS01 rna ? GO:0003735 ... Q839G3 35387982
    24 7p7q:J (2.4) BS01 rna ? GO:0000049 ... Q839F2 35387982
    25 7p7q:J (2.4) BS02 rna ? GO:0000049 ... Q839F2 35387982
    26 7p7q:K (2.4) BS01 rna ? GO:0002181 ... Q839E9 35387982
    27 7p7q:M (2.4) BS01 rna ? GO:0003729 ... R3K7G5 35387982
    28 7p7q:N (2.4) BS01 rna ? GO:0003735 ... Q839F4 35387982
    29 7p7q:N (2.4) BS02 rna ? GO:0003735 ... Q839F4 35387982
    30 7p7q:O (2.4) BS01 rna ? GO:0003735 ... Q839E5 35387982
    31 7p7q:P (2.4) BS01 rna ? GO:0000049 ... Q839F7 35387982
    32 7p7q:P (2.4) BS02 rna ? GO:0000049 ... Q839F7 35387982
    33 7p7q:Q (2.4) BS01 rna ? GO:0003735 ... Q839D8 35387982
    34 7p7q:Q (2.4) BS02 MG ? GO:0003735 ... Q839D8 35387982
    35 7p7q:R (2.4) BS01 rna ? GO:0003735 ... Q839E8 35387982
    36 7p7q:R (2.4) BS02 rna ? GO:0003735 ... Q839E8 35387982
    37 7p7q:S (2.4) BS01 rna ? GO:0003735 ... Q833P5 35387982
    38 7p7q:S (2.4) BS02 rna ? GO:0003735 ... Q833P5 35387982
    39 7p7q:T (2.4) BS01 rna ? GO:0000027 ... Q837C7 35387982
    40 7p7q:U (2.4) BS01 rna ? GO:0003723 ... Q836X6 35387982
    41 7p7q:V (2.4) BS01 rna ? GO:0003735 ... Q839F9 35387982
    42 7p7q:W (2.4) BS01 rna ? GO:0000027 ... Q839G2 35387982
    43 7p7q:X (2.4) BS01 rna ? GO:0003723 ... Q839F3 35387982
    44 7p7q:Y (2.4) BS01 rna ? GO:0003735 ... Q836X4 35387982
    45 7p7q:Y (2.4) BS02 rna ? GO:0003735 ... Q836X4 35387982
    46 7p7q:Z (2.4) BS01 rna ? GO:0003735 ... Q82ZE4 35387982
    47 7p7q:c (2.4) BS01 rna ? GO:0003735 ... Q831U9 35387982
    48 7p7q:d (2.4) BS01 rna ? GO:0003676 ... Q839F8 35387982
    49 7p7q:e (2.4) BS01 rna ? GO:0003723 ... Q82ZI6 35387982
    50 7p7q:f (2.4) BS01 rna ? GO:0003723 ... Q839E7 35387982
    51 7p7q:g (2.4) BS01 rna ? GO:0003735 ... Q839Z0 35387982
    52 7p7q:h (2.4) BS01 rna ? GO:0000028 ... Q839H0 35387982
    53 7p7q:i (2.4) BS01 rna ? GO:0003735 ... Q839F0 35387982
    54 7p7q:j (2.4) BS01 rna ? GO:0003723 ... Q82Z47 35387982
    55 7p7q:j (2.4) BS02 rna ? GO:0003723 ... Q82Z47 35387982
    56 7p7q:k (2.4) BS01 rna ? GO:0000049 ... Q839G5 35387982
    57 7p7q:l (2.4) BS01 rna ? GO:0003735 ... Q839E0 35387982
    58 7p7q:m (2.4) BS01 rna ? GO:0000049 ... Q839H1 35387982
    59 7p7q:n (2.4) BS01 rna ? GO:0000049 ... P59754 35387982
    60 7p7q:n (2.4) BS02 MG ? GO:0000049 ... P59754 35387982
    61 7p7q:o (2.4) BS01 rna ? GO:0003735 ... Q839F1 35387982
    62 7p7q:o (2.4) BS02 ZN ? GO:0003735 ... Q839F1 35387982
    63 7p7q:p (2.4) BS01 rna ? GO:0003735 ... Q82ZJ1 35387982
    64 7p7q:p (2.4) BS02 rna ? GO:0003735 ... Q82ZJ1 35387982
    65 7p7q:q (2.4) BS01 rna ? GO:0003735 ... Q834F9 35387982
    66 7p7q:r (2.4) BS01 rna ? GO:0003735 ... Q839F5 35387982
    67 7p7q:s (2.4) BS01 rna ? GO:0003735 ... Q839Y8 35387982
    68 7p7q:t (2.4) BS01 rna ? GO:0000028 ... Q839G0 35387982
    69 7p7q:u (2.4) BS01 rna ? GO:0003723 ... Q831Q7 35387982
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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