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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7p5z:2 (3.3) BS01 dna 3.6.4.12 GO:0000727 ... P29469 34963704
    2 7p5z:2 (3.3) BS02 dna 3.6.4.12 GO:0000727 ... P29469 34963704
    3 7p5z:2 (3.3) BS03 ATP 3.6.4.12 GO:0000727 ... P29469 34963704
    4 7p5z:2 (3.3) BS04 ZN 3.6.4.12 GO:0000727 ... P29469 34963704
    5 7p5z:2 (3.3) BS05 ADP 3.6.4.12 GO:0000727 ... P29469 34963704
    6 7p5z:3 (3.3) BS01 dna 3.6.4.12 GO:0000727 ... P24279 34963704
    7 7p5z:3 (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    8 7p5z:3 (3.3) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    9 7p5z:4 (3.3) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 34963704
    10 7p5z:4 (3.3) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 34963704
    11 7p5z:5 (3.3) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    12 7p5z:5 (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    13 7p5z:5 (3.3) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 34963704
    14 7p5z:6 (3.3) BS01 dna 3.6.4.12 GO:0000727 ... P53091 34963704
    15 7p5z:6 (3.3) BS02 ZN 3.6.4.12 GO:0000727 ... P53091 34963704
    16 7p5z:7 (3.3) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    17 7p5z:7 (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    18 7p5z:7 (3.3) BS03 MG 3.6.4.12 GO:0000727 ... P38132 34963704
    19 7p5z:7 (3.3) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 34963704
    20 7p5z:A (3.3) BS01 dna 3.6.4.12 GO:0000727 ... P29469 34963704
    21 7p5z:A (3.3) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 34963704
    22 7p5z:A (3.3) BS03 ZN 3.6.4.12 GO:0000727 ... P29469 34963704
    23 7p5z:A (3.3) BS04 ADP 3.6.4.12 GO:0000727 ... P29469 34963704
    24 7p5z:B (3.3) BS01 dna 3.6.4.12 GO:0000727 ... P24279 34963704
    25 7p5z:B (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    26 7p5z:B (3.3) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    27 7p5z:C (3.3) BS01 dna 3.6.4.12 GO:0000727 ... P30665 34963704
    28 7p5z:C (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 34963704
    29 7p5z:C (3.3) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 34963704
    30 7p5z:D (3.3) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    31 7p5z:D (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    32 7p5z:D (3.3) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 34963704
    33 7p5z:E (3.3) BS01 dna 3.6.4.12 GO:0000727 ... P53091 34963704
    34 7p5z:E (3.3) BS02 ZN 3.6.4.12 GO:0000727 ... P53091 34963704
    35 7p5z:F (3.3) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    36 7p5z:F (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    37 7p5z:F (3.3) BS03 MG 3.6.4.12 GO:0000727 ... P38132 34963704
    38 7p5z:F (3.3) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 34963704
    39 7p5z:G (3.3) BS01 ZN ? GO:0000775 ... P32325 34963704
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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