Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ow7:D (2.4) BS01 rna ? GO:0002181 ... P62917 N/A
    2 7ow7:E (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    3 7ow7:F (2.4) BS01 rna ? GO:0002181 ... P36578 N/A
    4 7ow7:F (2.4) BS02 rna ? GO:0002181 ... P36578 N/A
    5 7ow7:G (2.4) BS01 rna ? GO:0000027 ... P46777 N/A
    6 7ow7:G (2.4) BS02 rna ? GO:0000027 ... P46777 N/A
    7 7ow7:H (2.4) BS01 rna ? GO:0000027 ... Q02878 N/A
    8 7ow7:I (2.4) BS01 rna ? GO:0002181 ... P40429 N/A
    9 7ow7:J (2.4) BS01 rna ? GO:0002181 ... P18621 N/A
    10 7ow7:J (2.4) BS02 rna ? GO:0002181 ... P18621 N/A
    11 7ow7:K (2.4) BS01 rna ? GO:0002181 ... Q07020 N/A
    12 7ow7:L (2.4) BS01 rna ? GO:0002181 ... P84098 N/A
    13 7ow7:M (2.4) BS01 rna ? GO:0002181 ... Q02543 N/A
    14 7ow7:M (2.4) BS02 rna ? GO:0002181 ... Q02543 N/A
    15 7ow7:N (2.4) BS01 rna ? GO:0002181 ... P46778 N/A
    16 7ow7:N (2.4) BS02 rna ? GO:0002181 ... P46778 N/A
    17 7ow7:P (2.4) BS01 rna ? GO:0000054 ... P56537 N/A
    18 7ow7:Q (2.4) BS01 rna ? GO:0000122 ... P62829 N/A
    19 7ow7:R (2.4) BS01 rna ? GO:0000027 ... P62750 N/A
    20 7ow7:R (2.4) BS02 rna ? GO:0000027 ... P62750 N/A
    21 7ow7:S (2.4) BS01 rna ? GO:0002181 ... P61254 N/A
    22 7ow7:S (2.4) BS02 rna ? GO:0002181 ... P61254 N/A
    23 7ow7:T (2.4) BS01 rna ? GO:0002181 ... P61353 N/A
    24 7ow7:U (2.4) BS01 rna ? GO:0002181 ... P46776 N/A
    25 7ow7:V (2.4) BS01 rna ? GO:0002181 ... P47914 N/A
    26 7ow7:W (2.4) BS01 rna ? GO:0002181 ... P62888 N/A
    27 7ow7:X (2.4) BS01 rna ? GO:0002181 ... P62899 N/A
    28 7ow7:Y (2.4) BS01 rna ? GO:0002181 ... P62910 N/A
    29 7ow7:Z (2.4) BS01 rna ? GO:0000049 ... P18077 N/A
    30 7ow7:a (2.4) BS01 rna ? GO:0002181 ... P49207 N/A
    31 7ow7:b (2.4) BS01 rna ? GO:0000463 ... P42766 N/A
    32 7ow7:b (2.4) BS02 rna ? GO:0000463 ... P42766 N/A
    33 7ow7:c (2.4) BS01 rna ? GO:0002181 ... Q9Y3U8 N/A
    34 7ow7:d (2.4) BS01 rna ? GO:0002181 ... P61927 N/A
    35 7ow7:d (2.4) BS02 rna ? GO:0002181 ... P61927 N/A
    36 7ow7:d (2.4) BS03 ZN ? GO:0002181 ... P61927 N/A
    37 7ow7:f (2.4) BS01 rna N/A GO:0003735 ... N/A N/A
    38 7ow7:f (2.4) BS02 rna N/A GO:0003735 ... N/A N/A
    39 7ow7:i (2.4) BS01 rna ? GO:0002181 ... P83881 N/A
    40 7ow7:i (2.4) BS02 ZN ? GO:0002181 ... P83881 N/A
    41 7ow7:j (2.4) BS01 rna ? GO:0002181 ... P61513 N/A
    42 7ow7:j (2.4) BS02 ZN ? GO:0002181 ... P61513 N/A
    43 7ow7:k (2.4) BS01 rna ? GO:0002181 ... P46779 N/A
    44 7ow7:m (2.4) BS01 rna ? GO:0000463 ... P18124 N/A
    45 7ow7:m (2.4) BS02 rna ? GO:0000463 ... P18124 N/A
    46 7ow7:n (2.4) BS01 rna ? GO:0000470 ... P62424 N/A
    47 7ow7:n (2.4) BS02 rna ? GO:0000470 ... P62424 N/A
    48 7ow7:o (2.4) BS01 rna ? GO:0002181 ... P32969 N/A
    49 7ow7:p (2.4) BS01 rna ? GO:0000027 ... Q96L21 N/A
    50 7ow7:p (2.4) BS02 rna ? GO:0000027 ... Q96L21 N/A
    51 7ow7:q (2.4) BS01 rna ? GO:0000027 ... P62913 N/A
    52 7ow7:q (2.4) BS02 rna ? GO:0000027 ... P62913 N/A
    53 7ow7:r (2.4) BS01 rna ? GO:0001824 ... P26373 N/A
    54 7ow7:r (2.4) BS02 rna ? GO:0001824 ... P26373 N/A
    55 7ow7:s (2.4) BS01 rna ? GO:0003723 ... Q6IPH7 N/A
    56 7ow7:t (2.4) BS01 rna ? GO:0002181 ... P61313 N/A
    57 7ow7:t (2.4) BS02 rna ? GO:0002181 ... P61313 N/A
    58 7ow7:u (2.4) BS01 rna ? GO:0000027 ... P83731 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218