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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ojp:A (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    2 7ojp:A (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    3 7ojp:B (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    4 7ojp:B (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    5 7ojp:C (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    6 7ojp:C (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    7 7ojp:D (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    8 7ojp:D (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    9 7ojp:E (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    10 7ojp:F (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    11 7ojp:F (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    12 7ojp:G (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    13 7ojp:G (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    14 7ojp:H (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    15 7ojp:H (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    16 7ojp:I (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    17 7ojp:I (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    18 7ojp:J (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    19 7ojp:J (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    20 7ojp:K (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    21 7ojp:K (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    22 7ojp:L (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    23 7ojp:L (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    24 7ojp:M (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    25 7ojp:N (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    26 7ojp:N (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    27 7ojp:O (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    28 7ojp:O (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    29 7ojp:P (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    30 7ojp:Q (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    31 7ojp:R (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    32 7ojp:R (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    33 7ojp:S (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    34 7ojp:S (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    35 7ojp:T (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    36 7ojp:T (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    37 7ojp:U (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    38 7ojp:U (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    39 7ojp:V (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    40 7ojp:V (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    41 7ojp:W (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    42 7ojp:X (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    43 7ojp:X (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    44 7ojp:Y (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    45 7ojp:Y (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    46 7ojp:Z (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    47 7ojp:Z (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    48 7ojp:a (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    49 7ojp:a (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    50 7ojp:b (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    51 7ojp:b (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    52 7ojp:c (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    53 7ojp:c (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    54 7ojp:d (2.84) BS01 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    55 7ojp:d (2.84) BS02 VFE 2.3.1.129 GO:0005737 ... Q9X6P4 34569791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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