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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ohx:3 (3.3) BS01 rna ? GO:0000460 ... P10962 34813592
    2 7ohx:4 (3.3) BS01 rna ? GO:0003674 ... P35178 34813592
    3 7ohx:5 (3.3) BS01 rna ? GO:0003674 ... P53136 34813592
    4 7ohx:B (3.3) BS01 rna ? GO:0000027 ... P14126 34813592
    5 7ohx:C (3.3) BS01 rna ? GO:0002181 ... P10664 34813592
    6 7ohx:C (3.3) BS02 rna ? GO:0002181 ... P10664 34813592
    7 7ohx:D (3.3) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 34813592
    8 7ohx:E (3.3) BS01 rna ? GO:0000027 ... Q02326 34813592
    9 7ohx:F (3.3) BS01 rna ? GO:0000463 ... P05737 34813592
    10 7ohx:G (3.3) BS01 rna ? GO:0000470 ... P17076 34813592
    11 7ohx:G (3.3) BS02 rna ? GO:0000470 ... P17076 34813592
    12 7ohx:G (3.3) BS03 rna ? GO:0000470 ... P17076 34813592
    13 7ohx:H (3.3) BS01 rna ? GO:0002181 ... P05738 34813592
    14 7ohx:K (3.3) BS01 rna ? GO:0000462 ... P38779 34813592
    15 7ohx:L (3.3) BS01 rna ? GO:0002181 ... Q12690 34813592
    16 7ohx:L (3.3) BS02 rna ? GO:0002181 ... Q12690 34813592
    17 7ohx:M (3.3) BS01 rna ? GO:0000027 ... P36105 34813592
    18 7ohx:N (3.3) BS01 rna ? GO:0002181 ... P05748 34813592
    19 7ohx:N (3.3) BS02 rna ? GO:0002181 ... P05748 34813592
    20 7ohx:N (3.3) BS03 peptide ? GO:0002181 ... P05748 34813592
    21 7ohx:O (3.3) BS01 rna ? GO:0000470 ... P26784 34813592
    22 7ohx:P (3.3) BS01 rna ? GO:0000448 ... P05740 34813592
    23 7ohx:P (3.3) BS02 rna ? GO:0000448 ... P05740 34813592
    24 7ohx:Q (3.3) BS01 rna ? GO:0002181 ... P0CX49 34813592
    25 7ohx:S (3.3) BS01 rna ? GO:0002181 ... P0CX23 34813592
    26 7ohx:W (3.3) BS01 rna ? GO:0000027 ... P33201 34813592
    27 7ohx:Y (3.3) BS01 rna ? GO:0002181 ... P05743 34813592
    28 7ohx:Y (3.3) BS02 rna ? GO:0002181 ... P05743 34813592
    29 7ohx:b (3.3) BS01 rna ? GO:0000054 ... Q02892 34813592
    30 7ohx:e (3.3) BS01 rna ? GO:0002181 ... P38061 34813592
    31 7ohx:f (3.3) BS01 rna ? GO:0000027 ... P05744 34813592
    32 7ohx:h (3.3) BS01 rna ? GO:0000463 ... P0CX84 34813592
    33 7ohx:h (3.3) BS02 rna ? GO:0000463 ... P0CX84 34813592
    34 7ohx:j (3.3) BS01 rna ? GO:0000448 ... P49166 34813592
    35 7ohx:j (3.3) BS02 rna ? GO:0000448 ... P49166 34813592
    36 7ohx:j (3.3) BS03 ZN ? GO:0000448 ... P49166 34813592
    37 7ohx:m (3.3) BS01 rna ? GO:0000463 ... Q04660 34813592
    38 7ohx:m (3.3) BS02 peptide ? GO:0000463 ... Q04660 34813592
    39 7ohx:n (3.3) BS01 rna ? GO:0000462 ... P53261 34813592
    40 7ohx:n (3.3) BS02 rna ? GO:0000462 ... P53261 34813592
    41 7ohx:o (3.3) BS01 rna ? GO:0000463 ... P53927 34813592
    42 7ohx:t (3.3) BS01 rna ? GO:0000463 ... P40693 34813592
    43 7ohx:u (3.3) BS01 rna ? GO:0001671 ... Q07915 34813592
    44 7ohx:v (3.3) BS01 rna ? GO:0003674 ... P40007 34813592
    45 7ohx:v (3.3) BS02 rna ? GO:0003674 ... P40007 34813592
    46 7ohx:x (3.3) BS01 rna ? GO:0000055 ... P38805 34813592
    47 7ohx:y (3.3) BS01 rna ? GO:0000054 ... Q12522 34813592
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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