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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ohr:A (4.72) BS01 rna ? GO:0000027 ... Q08235 34813592
    2 7ohr:B (4.72) BS01 rna ? GO:0000027 ... P14126 34813592
    3 7ohr:C (4.72) BS01 rna ? GO:0002181 ... P10664 34813592
    4 7ohr:C (4.72) BS02 rna ? GO:0002181 ... P10664 34813592
    5 7ohr:D (4.72) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 34813592
    6 7ohr:E (4.72) BS01 rna ? GO:0000027 ... Q02326 34813592
    7 7ohr:F (4.72) BS01 rna ? GO:0000463 ... P05737 34813592
    8 7ohr:G (4.72) BS01 rna ? GO:0000470 ... P17076 34813592
    9 7ohr:G (4.72) BS02 rna ? GO:0000470 ... P17076 34813592
    10 7ohr:G (4.72) BS03 rna ? GO:0000470 ... P17076 34813592
    11 7ohr:H (4.72) BS01 rna ? GO:0002181 ... P05738 34813592
    12 7ohr:I (4.72) BS01 rna ? GO:0003682 ... Q07896 34813592
    13 7ohr:J (4.72) BS01 rna ? GO:0000280 ... P36049 34813592
    14 7ohr:K (4.72) BS01 rna ? GO:0000462 ... P38779 34813592
    15 7ohr:L (4.72) BS01 rna ? GO:0002181 ... Q12690 34813592
    16 7ohr:L (4.72) BS02 rna ? GO:0002181 ... Q12690 34813592
    17 7ohr:M (4.72) BS01 rna ? GO:0000027 ... P36105 34813592
    18 7ohr:N (4.72) BS01 rna ? GO:0002181 ... P05748 34813592
    19 7ohr:N (4.72) BS02 rna ? GO:0002181 ... P05748 34813592
    20 7ohr:O (4.72) BS01 rna ? GO:0000470 ... P26784 34813592
    21 7ohr:P (4.72) BS01 rna ? GO:0000448 ... P05740 34813592
    22 7ohr:P (4.72) BS02 rna ? GO:0000448 ... P05740 34813592
    23 7ohr:Q (4.72) BS01 rna ? GO:0002181 ... P0CX49 34813592
    24 7ohr:R (4.72) BS01 rna ? GO:0002181 ... P0CX82 34813592
    25 7ohr:S (4.72) BS01 rna ? GO:0002181 ... P0CX23 34813592
    26 7ohr:U (4.72) BS01 rna ? GO:0002181 ... P05749 34813592
    27 7ohr:V (4.72) BS01 rna ? GO:0002181 ... P0CX41 34813592
    28 7ohr:W (4.72) BS01 rna ? GO:0000027 ... P33201 34813592
    29 7ohr:X (4.72) BS01 rna ? GO:0000027 ... P04456 34813592
    30 7ohr:X (4.72) BS02 rna ? GO:0000027 ... P04456 34813592
    31 7ohr:Y (4.72) BS01 rna ? GO:0002181 ... P05743 34813592
    32 7ohr:Y (4.72) BS02 rna ? GO:0002181 ... P05743 34813592
    33 7ohr:Z (4.72) BS01 rna ? GO:0002181 ... P0C2H6 34813592
    34 7ohr:b (4.72) BS01 rna ? GO:0000054 ... Q02892 34813592
    35 7ohr:c (4.72) BS01 rna ? GO:0002181 ... P14120 34813592
    36 7ohr:d (4.72) BS01 rna ? GO:0002181 ... P0C2H8 34813592
    37 7ohr:e (4.72) BS01 rna ? GO:0002181 ... P38061 34813592
    38 7ohr:f (4.72) BS01 rna ? GO:0000027 ... P05744 34813592
    39 7ohr:g (4.72) BS01 rna ? GO:0002181 ... P87262 34813592
    40 7ohr:h (4.72) BS01 rna ? GO:0000463 ... P0CX84 34813592
    41 7ohr:h (4.72) BS02 rna ? GO:0000463 ... P0CX84 34813592
    42 7ohr:i (4.72) BS01 rna ? GO:0002181 ... P05745 34813592
    43 7ohr:j (4.72) BS01 rna ? GO:0000448 ... P49166 34813592
    44 7ohr:j (4.72) BS02 rna ? GO:0000448 ... P49166 34813592
    45 7ohr:j (4.72) BS03 ZN ? GO:0000448 ... P49166 34813592
    46 7ohr:k (4.72) BS01 rna ? GO:0002181 ... P49167 34813592
    47 7ohr:l (4.72) BS01 rna ? GO:0000463 ... Q08962 34813592
    48 7ohr:m (4.72) BS01 rna ? GO:0000463 ... Q04660 34813592
    49 7ohr:m (4.72) BS02 rna ? GO:0000463 ... Q04660 34813592
    50 7ohr:n (4.72) BS01 rna ? GO:0000462 ... P53261 34813592
    51 7ohr:n (4.72) BS02 rna ? GO:0000462 ... P53261 34813592
    52 7ohr:o (4.72) BS01 rna ? GO:0000463 ... P53927 34813592
    53 7ohr:q (4.72) BS01 rna 2.1.1.310 GO:0000463 ... P40991 34813592
    54 7ohr:r (4.72) BS01 rna ? GO:0000460 ... P40078 34813592
    55 7ohr:s (4.72) BS01 rna ? GO:0000055 ... P40010 34813592
    56 7ohr:t (4.72) BS01 rna ? GO:0000463 ... P40693 34813592
    57 7ohr:t (4.72) BS02 rna ? GO:0000463 ... P40693 34813592
    58 7ohr:t (4.72) BS03 rna ? GO:0000463 ... P40693 34813592
    59 7ohr:u (4.72) BS01 rna ? GO:0001671 ... Q07915 34813592
    60 7ohr:v (4.72) BS01 rna ? GO:0003674 ... P40007 34813592
    61 7ohr:v (4.72) BS02 rna ? GO:0003674 ... P40007 34813592
    62 7ohr:w (4.72) BS01 rna 2.1.1.167 GO:0000451 ... P25582 34813592
    63 7ohr:y (4.72) BS01 rna ? GO:0000054 ... Q12522 34813592
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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