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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7of5:0 (2.9) BS01 rna ? GO:0003723 ... Q9BYC8 34135319
    2 7of5:0 (2.9) BS02 ZN ? GO:0003723 ... Q9BYC8 34135319
    3 7of5:1 (2.9) BS01 rna ? GO:0003735 ... O75394 34135319
    4 7of5:2 (2.9) BS01 rna ? GO:0003735 ... Q9BQ48 34135319
    5 7of5:3 (2.9) BS01 rna ? GO:0003735 ... Q9NZE8 34135319
    6 7of5:4 (2.9) BS01 rna ? GO:0003735 ... Q9P0J6 34135319
    7 7of5:4 (2.9) BS02 ZN ? GO:0003735 ... Q9P0J6 34135319
    8 7of5:5 (2.9) BS01 rna ? GO:0003723 ... Q9BZE1 34135319
    9 7of5:6 (2.9) BS01 rna ? GO:0005515 ... Q96DV4 34135319
    10 7of5:6 (2.9) BS02 rna ? GO:0005515 ... Q96DV4 34135319
    11 7of5:8 (2.9) BS01 rna ? GO:0003723 ... Q9NQ50 34135319
    12 7of5:8 (2.9) BS02 peptide ? GO:0003723 ... Q9NQ50 34135319
    13 7of5:9 (2.9) BS01 rna ? GO:0003723 ... Q8IXM3 34135319
    14 7of5:C (2.9) BS01 rna 2.1.1.- GO:0001510 ... Q96CB9 34135319
    15 7of5:D (2.9) BS01 rna ? GO:0003723 ... Q5T653 34135319
    16 7of5:E (2.9) BS01 rna ? GO:0003723 ... P09001 34135319
    17 7of5:F (2.9) BS01 rna ? GO:0003723 ... Q9BYD3 34135319
    18 7of5:G (2.9) BS01 rna ? GO:0003690 ... Q7Z6M4 34135319
    19 7of5:H (2.9) BS01 rna ? GO:0003723 ... Q9BYD2 34135319
    20 7of5:I (2.9) BS01 rna ? GO:0003723 ... Q7Z7H8 34135319
    21 7of5:J (2.9) BS01 rna ? GO:0003723 ... Q9Y3B7 34135319
    22 7of5:K (2.9) BS01 rna ? GO:0003723 ... Q9BYD1 34135319
    23 7of5:L (2.9) BS01 rna ? GO:0003723 ... Q6P1L8 34135319
    24 7of5:M (2.9) BS01 rna ? GO:0003723 ... Q9P015 34135319
    25 7of5:N (2.9) BS01 rna ? GO:0003735 ... Q9NX20 34135319
    26 7of5:O (2.9) BS01 rna ? GO:0003735 ... Q9NRX2 34135319
    27 7of5:P (2.9) BS01 rna ? GO:0003723 ... Q9H0U6 34135319
    28 7of5:P (2.9) BS02 rna ? GO:0003723 ... Q9H0U6 34135319
    29 7of5:Q (2.9) BS01 rna ? GO:0003735 ... P49406 34135319
    30 7of5:R (2.9) BS01 rna ? GO:0003723 ... Q9BYC9 34135319
    31 7of5:S (2.9) BS01 rna ? GO:0003723 ... Q7Z2W9 34135319
    32 7of5:T (2.9) BS01 rna ? GO:0003723 ... Q9NWU5 34135319
    33 7of5:U (2.9) BS01 rna ? GO:0001650 ... Q16540 34135319
    34 7of5:V (2.9) BS01 rna ? GO:0003723 ... Q96A35 34135319
    35 7of5:W (2.9) BS01 rna ? GO:0003723 ... Q9P0M9 34135319
    36 7of5:X (2.9) BS01 rna ? GO:0003723 ... Q13084 34135319
    37 7of5:Y (2.9) BS01 rna ? GO:0003674 ... Q9HD33 34135319
    38 7of5:Z (2.9) BS01 rna ? GO:0003735 ... Q8TCC3 34135319
    39 7of5:a (2.9) BS01 rna ? GO:0003723 ... Q9Y6G3 34135319
    40 7of5:b (2.9) BS01 rna ? GO:0003723 ... Q8N983 34135319
    41 7of5:c (2.9) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 34135319
    42 7of5:d (2.9) BS01 rna ? GO:0003723 ... Q9BRJ2 34135319
    43 7of5:e (2.9) BS01 peptide ? GO:0003674 ... Q9H2W6 34135319
    44 7of5:f (2.9) BS01 rna ? GO:0005515 ... Q96GC5 34135319
    45 7of5:f (2.9) BS02 rna ? GO:0005515 ... Q96GC5 34135319
    46 7of5:f (2.9) BS03 peptide ? GO:0005515 ... Q96GC5 34135319
    47 7of5:g (2.9) BS01 rna ? GO:0003735 ... Q13405 34135319
    48 7of5:i (2.9) BS01 rna ? GO:0003735 ... Q4U2R6 34135319
    49 7of5:j (2.9) BS01 rna ? GO:0003735 ... Q86TS9 34135319
    50 7of5:o (2.9) BS01 rna ? GO:0003735 ... Q9BQC6 34135319
    51 7of5:q (2.9) BS01 rna ? GO:0005515 ... Q8TAE8 34135319
    52 7of5:r (2.9) BS01 rna ? GO:0003735 ... Q9NVS2 34135319
    53 7of5:r (2.9) BS02 ZN ? GO:0003735 ... Q9NVS2 34135319
    54 7of5:s (2.9) BS01 rna ? GO:0003723 ... Q9NP92 34135319
    55 7of5:u (2.9) BS01 rna ? GO:0005515 ... Q96EH3 34135319
    56 7of5:x (2.9) BS01 rna ? GO:0000287 ... Q9H4K7 34135319
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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