Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 52 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7of4:0 (2.7) BS01 rna ? GO:0003723 ... Q9BYC8 34135319
    2 7of4:0 (2.7) BS02 ZN ? GO:0003723 ... Q9BYC8 34135319
    3 7of4:1 (2.7) BS01 rna ? GO:0003735 ... O75394 34135319
    4 7of4:2 (2.7) BS01 rna ? GO:0003735 ... Q9BQ48 34135319
    5 7of4:3 (2.7) BS01 rna ? GO:0003735 ... Q9NZE8 34135319
    6 7of4:4 (2.7) BS01 rna ? GO:0003735 ... Q9P0J6 34135319
    7 7of4:4 (2.7) BS02 ZN ? GO:0003735 ... Q9P0J6 34135319
    8 7of4:5 (2.7) BS01 rna ? GO:0003723 ... Q9BZE1 34135319
    9 7of4:6 (2.7) BS01 rna ? GO:0005515 ... Q96DV4 34135319
    10 7of4:6 (2.7) BS02 rna ? GO:0005515 ... Q96DV4 34135319
    11 7of4:8 (2.7) BS01 rna ? GO:0003723 ... Q9NQ50 34135319
    12 7of4:9 (2.7) BS01 rna ? GO:0003723 ... Q8IXM3 34135319
    13 7of4:C (2.7) BS01 rna ? GO:0005525 ... O43824 34135319
    14 7of4:C (2.7) BS02 GTP ? GO:0005525 ... O43824 34135319
    15 7of4:C (2.7) BS03 MG ? GO:0005525 ... O43824 34135319
    16 7of4:D (2.7) BS01 rna ? GO:0003723 ... Q5T653 34135319
    17 7of4:E (2.7) BS01 rna ? GO:0003723 ... P09001 34135319
    18 7of4:F (2.7) BS01 rna ? GO:0003723 ... Q9BYD3 34135319
    19 7of4:H (2.7) BS01 rna ? GO:0003723 ... Q9BYD2 34135319
    20 7of4:I (2.7) BS01 rna ? GO:0003723 ... Q7Z7H8 34135319
    21 7of4:J (2.7) BS01 rna ? GO:0003723 ... Q9Y3B7 34135319
    22 7of4:K (2.7) BS01 rna ? GO:0003723 ... Q9BYD1 34135319
    23 7of4:L (2.7) BS01 rna ? GO:0003723 ... Q6P1L8 34135319
    24 7of4:M (2.7) BS01 rna ? GO:0003723 ... Q9P015 34135319
    25 7of4:N (2.7) BS01 rna ? GO:0003735 ... Q9NX20 34135319
    26 7of4:O (2.7) BS01 rna ? GO:0003735 ... Q9NRX2 34135319
    27 7of4:P (2.7) BS01 rna ? GO:0003723 ... Q9H0U6 34135319
    28 7of4:P (2.7) BS02 rna ? GO:0003723 ... Q9H0U6 34135319
    29 7of4:Q (2.7) BS01 rna ? GO:0003735 ... P49406 34135319
    30 7of4:R (2.7) BS01 rna ? GO:0003723 ... Q9BYC9 34135319
    31 7of4:S (2.7) BS01 rna ? GO:0003723 ... Q7Z2W9 34135319
    32 7of4:T (2.7) BS01 rna ? GO:0003723 ... Q9NWU5 34135319
    33 7of4:U (2.7) BS01 rna ? GO:0001650 ... Q16540 34135319
    34 7of4:V (2.7) BS01 rna ? GO:0003723 ... Q96A35 34135319
    35 7of4:W (2.7) BS01 rna ? GO:0003723 ... Q9P0M9 34135319
    36 7of4:X (2.7) BS01 rna ? GO:0003723 ... Q13084 34135319
    37 7of4:Y (2.7) BS01 rna ? GO:0003674 ... Q9HD33 34135319
    38 7of4:Z (2.7) BS01 rna ? GO:0003735 ... Q8TCC3 34135319
    39 7of4:a (2.7) BS01 rna ? GO:0003723 ... Q9Y6G3 34135319
    40 7of4:b (2.7) BS01 rna ? GO:0003723 ... Q8N983 34135319
    41 7of4:c (2.7) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 34135319
    42 7of4:d (2.7) BS01 rna ? GO:0003723 ... Q9BRJ2 34135319
    43 7of4:f (2.7) BS01 rna ? GO:0005515 ... Q96GC5 34135319
    44 7of4:f (2.7) BS02 rna ? GO:0005515 ... Q96GC5 34135319
    45 7of4:g (2.7) BS01 rna ? GO:0003735 ... Q13405 34135319
    46 7of4:i (2.7) BS01 rna ? GO:0003735 ... Q4U2R6 34135319
    47 7of4:j (2.7) BS01 rna ? GO:0003735 ... Q86TS9 34135319
    48 7of4:o (2.7) BS01 rna ? GO:0003735 ... Q9BQC6 34135319
    49 7of4:q (2.7) BS01 rna ? GO:0005515 ... Q8TAE8 34135319
    50 7of4:r (2.7) BS01 rna ? GO:0003735 ... Q9NVS2 34135319
    51 7of4:r (2.7) BS02 ZN ? GO:0003735 ... Q9NVS2 34135319
    52 7of4:s (2.7) BS01 rna ? GO:0003723 ... Q9NP92 34135319
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218