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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7oe0:B (2.69) BS01 rna ? GO:0000028 ... P0A7V0 34200244
    2 7oe0:C (2.69) BS01 rna ? GO:0000028 ... P0A7V3 34200244
    3 7oe0:D (2.69) BS01 rna ? GO:0000028 ... P0A7V8 34200244
    4 7oe0:E (2.69) BS01 rna ? GO:0000028 ... P0A7W1 34200244
    5 7oe0:F (2.69) BS01 rna ? GO:0002181 ... P02358 34200244
    6 7oe0:G (2.69) BS01 rna ? GO:0000028 ... P02359 34200244
    7 7oe0:H (2.69) BS01 rna ? GO:0000028 ... P0A7W7 34200244
    8 7oe0:I (2.69) BS01 rna ? GO:0000049 ... P0A7X3 34200244
    9 7oe0:J (2.69) BS01 rna ? GO:0000049 ... P0A7R5 34200244
    10 7oe0:K (2.69) BS01 rna ? GO:0002181 ... P0A7R9 34200244
    11 7oe0:L (2.69) BS01 rna ? GO:0000049 ... P0A7S3 34200244
    12 7oe0:M (2.69) BS01 rna ? GO:0000049 ... P0A7S9 34200244
    13 7oe0:N (2.69) BS01 rna ? GO:0000028 ... P0AG59 34200244
    14 7oe0:O (2.69) BS01 rna ? GO:0000028 ... P0ADZ4 34200244
    15 7oe0:P (2.69) BS01 rna ? GO:0000028 ... P0A7T3 34200244
    16 7oe0:Q (2.69) BS01 rna ? GO:0000028 ... P0AG63 34200244
    17 7oe0:R (2.69) BS01 rna ? GO:0002181 ... P0A7T7 34200244
    18 7oe0:S (2.69) BS01 rna ? GO:0000028 ... P0A7U3 34200244
    19 7oe0:T (2.69) BS01 rna ? GO:0000028 ... P0A7U7 34200244
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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