Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nz2:A1 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    2 7nz2:A1 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    3 7nz2:A1 (11.0) BS03 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    4 7nz2:A1 (11.0) BS04 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    5 7nz2:A1 (11.0) BS05 PNS ? GO:0003677 ... A0A0F7LRY2 34739874
    6 7nz2:A2 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    7 7nz2:A2 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    8 7nz2:A2 (11.0) BS03 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    9 7nz2:A2 (11.0) BS04 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    10 7nz2:A2 (11.0) BS05 PNS ? GO:0003677 ... A0A0F7LRY2 34739874
    11 7nz2:A3 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    12 7nz2:A3 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    13 7nz2:A3 (11.0) BS03 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    14 7nz2:A3 (11.0) BS04 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    15 7nz2:A3 (11.0) BS05 PNS ? GO:0003677 ... A0A0F7LRY2 34739874
    16 7nz2:A4 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    17 7nz2:A4 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    18 7nz2:A4 (11.0) BS03 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    19 7nz2:A4 (11.0) BS04 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    20 7nz2:A4 (11.0) BS05 PNS ? GO:0003677 ... A0A0F7LRY2 34739874
    21 7nz2:B1 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    22 7nz2:B1 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    23 7nz2:B1 (11.0) BS03 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    24 7nz2:B1 (11.0) BS04 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    25 7nz2:B2 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    26 7nz2:B2 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    27 7nz2:B2 (11.0) BS03 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    28 7nz2:B2 (11.0) BS04 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    29 7nz2:B3 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    30 7nz2:B3 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    31 7nz2:B3 (11.0) BS03 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    32 7nz2:B3 (11.0) BS04 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    33 7nz2:B4 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    34 7nz2:B4 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LRY2 34739874
    35 7nz2:B4 (11.0) BS03 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    36 7nz2:B4 (11.0) BS04 ATP ? GO:0003677 ... A0A0F7LRY2 34739874
    37 7nz2:C1 (11.0) BS01 dna ? GO:0005509 ... A0A0F7LMQ4 34739874
    38 7nz2:C2 (11.0) BS01 dna ? GO:0005509 ... A0A0F7LMQ4 34739874
    39 7nz2:D1 (11.0) BS01 dna ? GO:0005509 ... A0A0F7LMQ4 34739874
    40 7nz2:D2 (11.0) BS01 dna ? GO:0005509 ... A0A0F7LMQ4 34739874
    41 7nz2:E1 (11.0) BS01 dna ? GO:0005737 ... A0A0F7LPV6 34739874
    42 7nz2:E2 (11.0) BS01 dna ? GO:0005737 ... A0A0F7LPV6 34739874
    43 7nz2:E3 (11.0) BS01 dna ? GO:0005737 ... A0A0F7LPV6 34739874
    44 7nz2:E4 (11.0) BS01 dna ? GO:0005737 ... A0A0F7LPV6 34739874
    45 7nz2:F1 (11.0) BS01 dna ? GO:0005737 ... A0A0F7LPV6 34739874
    46 7nz2:F2 (11.0) BS01 dna ? GO:0005737 ... A0A0F7LPV6 34739874
    47 7nz2:F3 (11.0) BS01 dna ? GO:0005737 ... A0A0F7LPV6 34739874
    48 7nz2:F4 (11.0) BS01 dna ? GO:0005737 ... A0A0F7LPV6 34739874
    49 7nz2:G1 (11.0) BS01 PNS N/A GO:0006633 ... N/A 34739874
    50 7nz2:G2 (11.0) BS01 PNS N/A GO:0006633 ... N/A 34739874
    51 7nz2:G3 (11.0) BS01 PNS N/A GO:0006633 ... N/A 34739874
    52 7nz2:G4 (11.0) BS01 PNS N/A GO:0006633 ... N/A 34739874
    53 7nz2:I1 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    54 7nz2:I1 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    55 7nz2:I2 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    56 7nz2:I2 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    57 7nz2:I3 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    58 7nz2:I3 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    59 7nz2:I4 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    60 7nz2:I4 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    61 7nz2:J1 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    62 7nz2:J1 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    63 7nz2:J2 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    64 7nz2:J2 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    65 7nz2:J3 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    66 7nz2:J3 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    67 7nz2:J4 (11.0) BS01 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    68 7nz2:J4 (11.0) BS02 dna ? GO:0003677 ... A0A0F7LUV5 34739874
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218