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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nsh:B0 (3.2) BS01 rna ? GO:0003735 ... A0A4X1U0F6 33878294
    2 7nsh:B1 (3.2) BS01 rna ? GO:0003735 ... A0A286ZTW8 33878294
    3 7nsh:B2 (3.2) BS01 rna ? GO:0003735 ... F1SGC7 33878294
    4 7nsh:B3 (3.2) BS01 rna ? GO:0003735 ... A0A8D1MIP3 33878294
    5 7nsh:B4 (3.2) BS01 rna ? GO:0003735 ... A0A4X1ULI6 33878294
    6 7nsh:B5 (3.2) BS01 rna ? GO:0003735 ... I3LTC4 33878294
    7 7nsh:B5 (3.2) BS02 ZN ? GO:0003735 ... I3LTC4 33878294
    8 7nsh:B6 (3.2) BS01 rna ? GO:0003735 ... A0A4X1TLP9 33878294
    9 7nsh:B7 (3.2) BS01 rna ? GO:0003735 ... A0A4X1UFR4 33878294
    10 7nsh:B8 (3.2) BS01 rna ? GO:0003735 ... F1SVC5 33878294
    11 7nsh:B9 (3.2) BS01 rna ? GO:0003735 ... A0A287A731 33878294
    12 7nsh:B9 (3.2) BS02 ZN ? GO:0003735 ... A0A287A731 33878294
    13 7nsh:BC (3.2) BS01 rna 3.6.5.- GO:0003746 ... Q969S9 33878294
    14 7nsh:BC (3.2) BS02 GNP 3.6.5.- GO:0003746 ... Q969S9 33878294
    15 7nsh:BC (3.2) BS03 MG 3.6.5.- GO:0003746 ... Q969S9 33878294
    16 7nsh:BD (3.2) BS01 rna ? GO:0003735 ... F1RRN2 33878294
    17 7nsh:BD (3.2) BS02 MG ? GO:0003735 ... F1RRN2 33878294
    18 7nsh:BE (3.2) BS01 rna ? GO:0003735 ... A0A140UHW4 33878294
    19 7nsh:BF (3.2) BS01 rna ? GO:0003735 ... A0A287B9C4 33878294
    20 7nsh:BG (3.2) BS01 rna ? GO:0005515 ... Q96E11 33878294
    21 7nsh:BI (3.2) BS01 rna ? GO:0003735 ... I3LR45 33878294
    22 7nsh:BJ (3.2) BS01 peptide ? GO:0005840 ... F1RWJ0 33878294
    23 7nsh:BJ (3.2) BS02 peptide ? GO:0005840 ... F1RWJ0 33878294
    24 7nsh:BJ (3.2) BS03 peptide ? GO:0005840 ... F1RWJ0 33878294
    25 7nsh:BJ (3.2) BS04 peptide ? GO:0005840 ... F1RWJ0 33878294
    26 7nsh:BJ (3.2) BS05 rna ? GO:0005840 ... F1RWJ0 33878294
    27 7nsh:BK (3.2) BS01 rna ? GO:0003735 ... F1RU54 33878294
    28 7nsh:BN (3.2) BS01 rna ? GO:0003729 ... K7GP19 33878294
    29 7nsh:BO (3.2) BS01 rna ? GO:0003735 ... A0A287BMZ6 33878294
    30 7nsh:BP (3.2) BS01 rna N/A GO:0003735 ... N/A 33878294
    31 7nsh:BP (3.2) BS02 MG N/A GO:0003735 ... N/A 33878294
    32 7nsh:BQ (3.2) BS01 rna ? GO:0003735 ... F1RI89 33878294
    33 7nsh:BR (3.2) BS01 rna ? GO:0003735 ... F1RMQ4 33878294
    34 7nsh:BS (3.2) BS01 rna ? GO:0003735 ... A0A286ZNK1 33878294
    35 7nsh:BS (3.2) BS02 rna ? GO:0003735 ... A0A286ZNK1 33878294
    36 7nsh:BT (3.2) BS01 rna ? GO:0003735 ... I3LNJ0 33878294
    37 7nsh:BU (3.2) BS01 rna ? GO:0003735 ... A0A286ZU56 33878294
    38 7nsh:BV (3.2) BS01 rna ? GO:0003723 ... F1RY70 33878294
    39 7nsh:BW (3.2) BS01 rna ? GO:0003735 ... A0A4X1TXR4 33878294
    40 7nsh:BX (3.2) BS01 rna N/A GO:0003735 ... N/A 33878294
    41 7nsh:BY (3.2) BS01 rna ? GO:0003723 ... F1RHJ1 33878294
    42 7nsh:Ba (3.2) BS01 rna ? GO:0003735 ... A0A287BIV6 33878294
    43 7nsh:Bb (3.2) BS01 rna ? GO:0005739 ... F1RW03 33878294
    44 7nsh:Bb (3.2) BS02 rna ? GO:0005739 ... F1RW03 33878294
    45 7nsh:Bd (3.2) BS01 rna ? GO:0005730 ... A0A5G2R2V2 33878294
    46 7nsh:Be (3.2) BS01 rna ? GO:0003735 ... A0A8D1F1K9 33878294
    47 7nsh:Be (3.2) BS02 MG ? GO:0003735 ... A0A8D1F1K9 33878294
    48 7nsh:Bf (3.2) BS01 rna ? GO:0005739 ... A0A287BQA1 33878294
    49 7nsh:Bg (3.2) BS01 rna ? GO:0003735 ... F1S8U4 33878294
    50 7nsh:Bh (3.2) BS01 rna ? GO:0003723 ... F1SR64 33878294
    51 7nsh:Bi (3.2) BS01 rna ? GO:0005739 ... I3LGM5 33878294
    52 7nsh:Bj (3.2) BS01 rna ? GO:0003735 ... F1SRT0 33878294
    53 7nsh:Bk (3.2) BS01 rna ? GO:0005739 ... A0A480J9Z6 33878294
    54 7nsh:Bk (3.2) BS02 rna ? GO:0005739 ... A0A480J9Z6 33878294
    55 7nsh:Bl (3.2) BS01 rna ? GO:0003735 ... A0A0R4J8D6 33878294
    56 7nsh:Bn (3.2) BS01 rna ? GO:0003735 ... A0A8D1P1C8 33878294
    57 7nsh:Bo (3.2) BS01 rna ? GO:0003735 ... F1S9B7 33878294
    58 7nsh:Bp (3.2) BS01 rna ? GO:0005739 ... A0A341D604 33878294
    59 7nsh:Bq (3.2) BS01 rna ? N/A I3LN63 33878294
    60 7nsh:Bt (3.2) BS01 rna ? GO:0003735 ... A0A287BP93 33878294
    61 7nsh:Bt (3.2) BS02 MG ? GO:0003735 ... A0A287BP93 33878294
    62 7nsh:Bv (3.2) BS01 rna ? GO:0005634 ... A0A286ZXA6 33878294
    63 7nsh:Bw (3.2) BS01 rna ? GO:0003735 ... A0A480QIM3 33878294
    64 7nsh:Bx (3.2) BS01 rna ? GO:0003735 ... F1RRH6 33878294
    65 7nsh:Bx (3.2) BS02 ZN ? GO:0003735 ... F1RRH6 33878294
    66 7nsh:CL (3.2) BS01 peptide ? GO:0003735 ... A0A4X1U6S6 33878294
    67 7nsh:CL (3.2) BS02 peptide ? GO:0003735 ... A0A4X1U6S6 33878294
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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