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BioLiP
Download all results in tab-seperated text for 100 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7n8b:AA (3.05) BS01 rna ? GO:0002181 ... P0CX45 35489333
    2 7n8b:AB (3.05) BS01 rna ? GO:0000027 ... P14126 35489333
    3 7n8b:AB (3.05) BS02 MG ? GO:0000027 ... P14126 35489333
    4 7n8b:AC (3.05) BS01 rna ? GO:0002181 ... P10664 35489333
    5 7n8b:AC (3.05) BS02 rna ? GO:0002181 ... P10664 35489333
    6 7n8b:AD (3.05) BS01 rna ? GO:0000027 ... P26321 35489333
    7 7n8b:AD (3.05) BS02 rna ? GO:0000027 ... P26321 35489333
    8 7n8b:AE (3.05) BS01 rna ? GO:0003735 ... Q02326 35489333
    9 7n8b:AF (3.05) BS01 rna ? GO:0000463 ... P05737 35489333
    10 7n8b:AF (3.05) BS02 rna ? GO:0000463 ... P05737 35489333
    11 7n8b:AG (3.05) BS01 rna ? GO:0000470 ... P17076 35489333
    12 7n8b:AG (3.05) BS02 rna ? GO:0000470 ... P17076 35489333
    13 7n8b:AH (3.05) BS01 rna ? GO:0002181 ... P05738 35489333
    14 7n8b:AI (3.05) BS01 rna ? GO:0000027 ... P41805 35489333
    15 7n8b:AI (3.05) BS02 rna ? GO:0000027 ... P41805 35489333
    16 7n8b:AJ (3.05) BS01 rna ? GO:0000027 ... P0C0W9 35489333
    17 7n8b:AJ (3.05) BS02 rna ? GO:0000027 ... P0C0W9 35489333
    18 7n8b:AL (3.05) BS01 rna ? GO:0002181 ... Q12690 35489333
    19 7n8b:AL (3.05) BS02 rna ? GO:0002181 ... Q12690 35489333
    20 7n8b:AM (3.05) BS01 rna ? GO:0000027 ... P36105 35489333
    21 7n8b:AN (3.05) BS01 rna ? GO:0002181 ... P05748 35489333
    22 7n8b:AN (3.05) BS02 rna ? GO:0002181 ... P05748 35489333
    23 7n8b:AO (3.05) BS01 rna ? GO:0000470 ... P26784 35489333
    24 7n8b:AP (3.05) BS01 rna ? GO:0000448 ... P05740 35489333
    25 7n8b:AP (3.05) BS02 rna ? GO:0000448 ... P05740 35489333
    26 7n8b:AQ (3.05) BS01 rna ? GO:0002181 ... P0CX49 35489333
    27 7n8b:AR (3.05) BS01 rna ? GO:0002181 ... P0CX82 35489333
    28 7n8b:AR (3.05) BS02 rna ? GO:0002181 ... P0CX82 35489333
    29 7n8b:AS (3.05) BS01 rna ? GO:0002181 ... P0CX23 35489333
    30 7n8b:AS (3.05) BS02 rna ? GO:0002181 ... P0CX23 35489333
    31 7n8b:AT (3.05) BS01 rna ? GO:0002181 ... Q02753 35489333
    32 7n8b:AT (3.05) BS02 rna ? GO:0002181 ... Q02753 35489333
    33 7n8b:AU (3.05) BS01 rna ? GO:0003735 ... P05749 35489333
    34 7n8b:AV (3.05) BS01 rna ? GO:0002181 ... P0CX41 35489333
    35 7n8b:AW (3.05) BS01 rna ? N/A P04449 35489333
    36 7n8b:AX (3.05) BS01 rna ? GO:0003735 ... P04456 35489333
    37 7n8b:AX (3.05) BS02 rna ? GO:0003735 ... P04456 35489333
    38 7n8b:AY (3.05) BS01 rna ? GO:0002181 ... P05743 35489333
    39 7n8b:AY (3.05) BS02 rna ? GO:0002181 ... P05743 35489333
    40 7n8b:AZ (3.05) BS01 rna ? GO:0002181 ... P0C2H6 35489333
    41 7n8b:Aa (3.05) BS01 rna ? GO:0002181 ... P02406 35489333
    42 7n8b:Aa (3.05) BS02 MG ? GO:0002181 ... P02406 35489333
    43 7n8b:Ab (3.05) BS01 rna ? GO:0002181 ... P05747 35489333
    44 7n8b:Ac (3.05) BS01 rna ? GO:0002181 ... P14120 35489333
    45 7n8b:Ad (3.05) BS01 rna ? GO:0002181 ... P0C2H8 35489333
    46 7n8b:Ae (3.05) BS01 rna ? GO:0002181 ... P38061 35489333
    47 7n8b:Ae (3.05) BS02 MG ? GO:0002181 ... P38061 35489333
    48 7n8b:Ae (3.05) BS03 MG ? GO:0002181 ... P38061 35489333
    49 7n8b:Af (3.05) BS01 rna ? GO:0000027 ... P05744 35489333
    50 7n8b:Af (3.05) BS02 MG ? GO:0000027 ... P05744 35489333
    51 7n8b:Ag (3.05) BS01 rna ? GO:0002181 ... P87262 35489333
    52 7n8b:Ah (3.05) BS01 rna ? GO:0000463 ... P0CX84 35489333
    53 7n8b:Ah (3.05) BS02 rna ? GO:0000463 ... P0CX84 35489333
    54 7n8b:Ai (3.05) BS01 rna ? GO:0002181 ... P05745 35489333
    55 7n8b:Aj (3.05) BS01 rna ? GO:0000448 ... P49166 35489333
    56 7n8b:Aj (3.05) BS02 rna ? GO:0000448 ... P49166 35489333
    57 7n8b:Ak (3.05) BS01 rna ? GO:0002181 ... P49167 35489333
    58 7n8b:Al (3.05) BS01 rna ? GO:0002181 ... P04650 35489333
    59 7n8b:Al (3.05) BS02 rna ? GO:0002181 ... P04650 35489333
    60 7n8b:Am (3.05) BS01 rna ? GO:0003735 ... P0CH08 35489333
    61 7n8b:Ao (3.05) BS01 rna ? GO:0002181 ... P0CX27 35489333
    62 7n8b:Ao (3.05) BS02 ZN ? GO:0002181 ... P0CX27 35489333
    63 7n8b:Ap (3.05) BS01 rna ? GO:0002181 ... P0CX25 35489333
    64 7n8b:BA (3.05) BS01 rna ? GO:0003735 ... P32905 35489333
    65 7n8b:BB (3.05) BS01 rna ? GO:0003735 ... P33442 35489333
    66 7n8b:BC (3.05) BS01 rna ? GO:0003723 ... P25443 35489333
    67 7n8b:BD (3.05) BS01 rna ? GO:0000054 ... P05750 35489333
    68 7n8b:BE (3.05) BS01 rna ? GO:0002181 ... P0CX35 35489333
    69 7n8b:BF (3.05) BS01 rna ? GO:0000028 ... P26783 35489333
    70 7n8b:BG (3.05) BS01 rna ? GO:0000462 ... P0CX37 35489333
    71 7n8b:BH (3.05) BS01 rna ? GO:0002181 ... P26786 35489333
    72 7n8b:BI (3.05) BS01 rna ? GO:0000462 ... P0CX39 35489333
    73 7n8b:BI (3.05) BS02 rna ? GO:0000462 ... P0CX39 35489333
    74 7n8b:BJ (3.05) BS01 rna ? GO:0000462 ... O13516 35489333
    75 7n8b:BK (3.05) BS01 rna ? GO:0000054 ... Q08745 35489333
    76 7n8b:BL (3.05) BS01 rna ? GO:0000028 ... P0CX47 35489333
    77 7n8b:BM (3.05) BS01 rna ? GO:0003735 ... P48589 35489333
    78 7n8b:BN (3.05) BS01 rna ? GO:0000462 ... P05756 35489333
    79 7n8b:BN (3.05) BS02 rna ? GO:0000462 ... P05756 35489333
    80 7n8b:BO (3.05) BS01 rna ? GO:0000028 ... P06367 35489333
    81 7n8b:BP (3.05) BS01 rna ? GO:0003723 ... Q01855 35489333
    82 7n8b:BQ (3.05) BS01 rna ? GO:0000462 ... P0CX51 35489333
    83 7n8b:BR (3.05) BS01 rna ? GO:0003735 ... P02407 35489333
    84 7n8b:BS (3.05) BS01 rna ? GO:0000054 ... P0CX55 35489333
    85 7n8b:BT (3.05) BS01 rna ? GO:0000028 ... P07280 35489333
    86 7n8b:BU (3.05) BS01 rna ? GO:0003723 ... P38701 35489333
    87 7n8b:BV (3.05) BS01 rna ? GO:0000447 ... P0C0V8 35489333
    88 7n8b:BW (3.05) BS01 rna ? GO:0002181 ... P0C0W1 35489333
    89 7n8b:BX (3.05) BS01 rna ? GO:0000462 ... P0CX29 35489333
    90 7n8b:BY (3.05) BS01 rna ? GO:0000462 ... P0CX31 35489333
    91 7n8b:BZ (3.05) BS01 rna ? N/A Q3E792 35489333
    92 7n8b:Ba (3.05) BS01 rna ? GO:0003735 ... P39939 35489333
    93 7n8b:Bb (3.05) BS01 rna ? GO:0000028 ... P35997 35489333
    94 7n8b:Bb (3.05) BS02 ZN ? GO:0000028 ... P35997 35489333
    95 7n8b:Bc (3.05) BS01 rna ? GO:0000028 ... Q3E7X9 35489333
    96 7n8b:Bd (3.05) BS01 rna ? GO:0002181 ... P41057 35489333
    97 7n8b:Be (3.05) BS01 rna ? GO:0002181 ... P0CX33 35489333
    98 7n8b:Bf (3.05) BS01 rna ? GO:0003735 ... P05759 35489333
    99 7n8b:Bg (3.05) BS01 rna ? GO:0001965 ... P38011 35489333
    100 7n8b:Bh (3.05) BS01 rna ? N/A P39015 35489333
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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