Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7n61:0X (3.5) BS01 ADP ? GO:0003774 ... A8I9T2 35578022
    2 7n61:0Y (3.5) BS01 ADP ? GO:0003774 ... A8I9T2 35578022
    3 7n61:0Z (3.5) BS01 ADP ? GO:0003774 ... A8I9T2 35578022
    4 7n61:1A (3.5) BS01 ADP ? GO:0003774 ... A8I9T2 35578022
    5 7n61:1a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    6 7n61:1b (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    7 7n61:1c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    8 7n61:1d (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    9 7n61:1e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    10 7n61:1f (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    11 7n61:1g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    12 7n61:1h (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    13 7n61:2a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    14 7n61:2b (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    15 7n61:2c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    16 7n61:2d (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    17 7n61:2e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    18 7n61:2f (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    19 7n61:2g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    20 7n61:2h (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    21 7n61:3a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    22 7n61:3b (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    23 7n61:3c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    24 7n61:3d (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    25 7n61:3e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    26 7n61:3f (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    27 7n61:3g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    28 7n61:3h (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    29 7n61:4a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    30 7n61:4b (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    31 7n61:4c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    32 7n61:4d (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    33 7n61:4e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    34 7n61:4f (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    35 7n61:4g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    36 7n61:4h (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    37 7n61:5a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    38 7n61:5b (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    39 7n61:5c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    40 7n61:5d (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    41 7n61:5e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    42 7n61:5f (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    43 7n61:5g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    44 7n61:5h (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    45 7n61:6a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    46 7n61:6b (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    47 7n61:6c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    48 7n61:6d (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    49 7n61:6e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    50 7n61:6f (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    51 7n61:6g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    52 7n61:6h (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    53 7n61:7a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    54 7n61:7b (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    55 7n61:7c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    56 7n61:7d (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    57 7n61:7e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    58 7n61:7f (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    59 7n61:7g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    60 7n61:7h (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    61 7n61:8a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    62 7n61:8b (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    63 7n61:8c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    64 7n61:8d (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    65 7n61:8e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    66 7n61:8f (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    67 7n61:8g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    68 7n61:8h (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    69 7n61:9a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    70 7n61:9b (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    71 7n61:9c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    72 7n61:9d (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    73 7n61:9e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    74 7n61:9f (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    75 7n61:9g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    76 7n61:9h (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    77 7n61:Aa (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    78 7n61:Ab (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    79 7n61:Ac (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    80 7n61:Ad (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    81 7n61:Ae (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    82 7n61:Af (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    83 7n61:Ag (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    84 7n61:Ah (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    85 7n61:Ba (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    86 7n61:Bb (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    87 7n61:Bc (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    88 7n61:Bd (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    89 7n61:Be (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    90 7n61:Bf (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    91 7n61:Bg (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    92 7n61:Bh (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    93 7n61:Ca (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    94 7n61:Cb (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    95 7n61:Cc (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    96 7n61:Cd (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    97 7n61:Ce (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    98 7n61:Cf (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    99 7n61:Cg (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    100 7n61:Ch (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    101 7n61:Da (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    102 7n61:Db (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    103 7n61:Dc (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    104 7n61:Dd (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    105 7n61:De (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    106 7n61:Df (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    107 7n61:Dg (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    108 7n61:Dh (3.5) BS01 GTP 3.6.5.- GO:0005200 ... P09204 35578022
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218