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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ml4:0 (3.1) BS01 SF4 3.6.4.12 GO:0000019 ... P06839 35051353
    2 7ml4:4 (3.1) BS01 ZN ? GO:0000112 ... Q12004 35051353
    3 7ml4:6 (3.1) BS01 ZN ? GO:0000112 ... Q04673 35051353
    4 7ml4:6 (3.1) BS02 ZN ? GO:0000112 ... Q04673 35051353
    5 7ml4:6 (3.1) BS03 ZN ? GO:0000112 ... Q04673 35051353
    6 7ml4:6 (3.1) BS04 ZN ? GO:0000112 ... Q04673 35051353
    7 7ml4:A (3.1) BS01 rna 2.7.7.6 GO:0000428 ... P04050 35051353
    8 7ml4:A (3.1) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 35051353
    9 7ml4:A (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 35051353
    10 7ml4:A (3.1) BS04 MG 2.7.7.6 GO:0000428 ... P04050 35051353
    11 7ml4:B (3.1) BS01 dna 2.7.7.6 GO:0000428 ... P08518 35051353
    12 7ml4:B (3.1) BS02 rna 2.7.7.6 GO:0000428 ... P08518 35051353
    13 7ml4:B (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 35051353
    14 7ml4:C (3.1) BS01 ZN ? GO:0000428 ... P16370 35051353
    15 7ml4:I (3.1) BS01 ZN ? GO:0000428 ... P27999 35051353
    16 7ml4:I (3.1) BS02 ZN ? GO:0000428 ... P27999 35051353
    17 7ml4:J (3.1) BS01 ZN ? GO:0000428 ... P22139 35051353
    18 7ml4:L (3.1) BS01 ZN ? GO:0000428 ... P40422 35051353
    19 7ml4:M (3.1) BS01 dna ? GO:0000993 ... P29055 35051353
    20 7ml4:M (3.1) BS02 dna ? GO:0000993 ... P29055 35051353
    21 7ml4:M (3.1) BS03 ZN ? GO:0000993 ... P29055 35051353
    22 7ml4:O (3.1) BS01 dna ? GO:0000126 ... P13393 35051353
    23 7ml4:O (3.1) BS02 dna ? GO:0000126 ... P13393 35051353
    24 7ml4:U (3.1) BS01 dna ? GO:0000979 ... P32773 35051353
    25 7ml4:W (3.1) BS01 ZN ? GO:0000993 ... P36100 35051353
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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