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BioLiP
Download all results in tab-seperated text for 117 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7m57:A (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    2 7m57:A (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    3 7m57:A (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    4 7m57:A (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    5 7m57:B (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    6 7m57:B (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    7 7m57:B (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    8 7m57:BB (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    9 7m57:BB (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    10 7m57:BB (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    11 7m57:BB (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    12 7m57:C (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    13 7m57:C (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    14 7m57:C (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    15 7m57:C (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    16 7m57:CC (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    17 7m57:D (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    18 7m57:D (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    19 7m57:D (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    20 7m57:DD (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    21 7m57:DD (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    22 7m57:DD (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    23 7m57:DD (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    24 7m57:E (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    25 7m57:E (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    26 7m57:E (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    27 7m57:E (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    28 7m57:E (4.0) BS05 rna ? GO:0005198 ... P17574 34866603
    29 7m57:EE (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    30 7m57:EE (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    31 7m57:EE (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    32 7m57:EE (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    33 7m57:F (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    34 7m57:F (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    35 7m57:F (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    36 7m57:F (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    37 7m57:F (4.0) BS05 rna ? GO:0005198 ... P17574 34866603
    38 7m57:FF (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    39 7m57:FF (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    40 7m57:FF (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    41 7m57:FF (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    42 7m57:FF (4.0) BS05 rna ? GO:0005198 ... P17574 34866603
    43 7m57:G (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    44 7m57:G (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    45 7m57:G (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    46 7m57:G (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    47 7m57:GG (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    48 7m57:GG (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    49 7m57:GG (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    50 7m57:GG (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    51 7m57:H (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    52 7m57:H (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    53 7m57:H (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    54 7m57:H (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    55 7m57:HH (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    56 7m57:HH (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    57 7m57:HH (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    58 7m57:HH (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    59 7m57:HH (4.0) BS05 rna ? GO:0005198 ... P17574 34866603
    60 7m57:I (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    61 7m57:I (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    62 7m57:I (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    63 7m57:I (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    64 7m57:II (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    65 7m57:II (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    66 7m57:II (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    67 7m57:J (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    68 7m57:J (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    69 7m57:J (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    70 7m57:J (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    71 7m57:J (4.0) BS05 rna ? GO:0005198 ... P17574 34866603
    72 7m57:JJ (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    73 7m57:JJ (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    74 7m57:JJ (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    75 7m57:JJ (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    76 7m57:K (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    77 7m57:K (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    78 7m57:K (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    79 7m57:K (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    80 7m57:KK (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    81 7m57:KK (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    82 7m57:KK (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    83 7m57:KK (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    84 7m57:KK (4.0) BS05 rna ? GO:0005198 ... P17574 34866603
    85 7m57:L (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    86 7m57:L (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    87 7m57:L (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    88 7m57:L (4.0) BS04 PO4 ? GO:0005198 ... P17574 34866603
    89 7m57:LL (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    90 7m57:LL (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    91 7m57:LL (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    92 7m57:LL (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    93 7m57:M (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    94 7m57:M (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    95 7m57:M (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    96 7m57:MM (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    97 7m57:MM (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    98 7m57:MM (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    99 7m57:N (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    100 7m57:N (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    101 7m57:N (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    102 7m57:N (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    103 7m57:N (4.0) BS05 PO4 ? GO:0005198 ... P17574 34866603
    104 7m57:NN (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    105 7m57:NN (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    106 7m57:O (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    107 7m57:O (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    108 7m57:O (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    109 7m57:O (4.0) BS04 rna ? GO:0005198 ... P17574 34866603
    110 7m57:O (4.0) BS05 rna ? GO:0005198 ... P17574 34866603
    111 7m57:OO (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    112 7m57:OO (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    113 7m57:OO (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    114 7m57:OO (4.0) BS04 PO4 ? GO:0005198 ... P17574 34866603
    115 7m57:PP (4.0) BS01 rna ? GO:0005198 ... P17574 34866603
    116 7m57:PP (4.0) BS02 rna ? GO:0005198 ... P17574 34866603
    117 7m57:PP (4.0) BS03 rna ? GO:0005198 ... P17574 34866603
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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