Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7m2v:A (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    2 7m2v:A (1.8) BS02 rna ? GO:0005198 ... P17574 34866603
    3 7m2v:A (1.8) BS03 MG ? GO:0005198 ... P17574 34866603
    4 7m2v:B (1.8) BS01 CL ? GO:0005198 ... P17574 34866603
    5 7m2v:B (1.8) BS02 CL ? GO:0005198 ... P17574 34866603
    6 7m2v:C (1.8) BS01 PO4 ? GO:0005198 ... P17574 34866603
    7 7m2v:D (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    8 7m2v:D (1.8) BS02 rna ? GO:0005198 ... P17574 34866603
    9 7m2v:D (1.8) BS03 rna ? GO:0005198 ... P17574 34866603
    10 7m2v:D (1.8) BS04 PO4 ? GO:0005198 ... P17574 34866603
    11 7m2v:E (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    12 7m2v:FX (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    13 7m2v:FX (1.8) BS02 rna ? GO:0005198 ... P17574 34866603
    14 7m2v:FX (1.8) BS03 rna ? GO:0005198 ... P17574 34866603
    15 7m2v:FX (1.8) BS04 CL ? GO:0005198 ... P17574 34866603
    16 7m2v:FX (1.8) BS05 MG ? GO:0005198 ... P17574 34866603
    17 7m2v:G (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    18 7m2v:G (1.8) BS02 MG ? GO:0005198 ... P17574 34866603
    19 7m2v:GG (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    20 7m2v:GG (1.8) BS02 PO4 ? GO:0005198 ... P17574 34866603
    21 7m2v:H (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    22 7m2v:H (1.8) BS02 CL ? GO:0005198 ... P17574 34866603
    23 7m2v:H (1.8) BS03 MG ? GO:0005198 ... P17574 34866603
    24 7m2v:HH (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    25 7m2v:HH (1.8) BS02 rna ? GO:0005198 ... P17574 34866603
    26 7m2v:I (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    27 7m2v:I (1.8) BS02 PO4 ? GO:0005198 ... P17574 34866603
    28 7m2v:II (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    29 7m2v:II (1.8) BS02 MG ? GO:0005198 ... P17574 34866603
    30 7m2v:J (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    31 7m2v:J (1.8) BS02 rna ? GO:0005198 ... P17574 34866603
    32 7m2v:J (1.8) BS03 MG ? GO:0005198 ... P17574 34866603
    33 7m2v:K (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    34 7m2v:K (1.8) BS02 CL ? GO:0005198 ... P17574 34866603
    35 7m2v:K (1.8) BS03 MG ? GO:0005198 ... P17574 34866603
    36 7m2v:KK (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    37 7m2v:L (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    38 7m2v:L (1.8) BS02 rna ? GO:0005198 ... P17574 34866603
    39 7m2v:NN (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    40 7m2v:NN (1.8) BS02 rna ? GO:0005198 ... P17574 34866603
    41 7m2v:NN (1.8) BS03 PO4 ? GO:0005198 ... P17574 34866603
    42 7m2v:NN (1.8) BS04 CL ? GO:0005198 ... P17574 34866603
    43 7m2v:NN (1.8) BS05 CL ? GO:0005198 ... P17574 34866603
    44 7m2v:O (1.8) BS01 rna ? GO:0005198 ... P17574 34866603
    45 7m2v:O (1.8) BS02 rna ? GO:0005198 ... P17574 34866603
    46 7m2v:O (1.8) BS03 MG ? GO:0005198 ... P17574 34866603
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218