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BioLiP
Download all results in tab-seperated text for 83 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7l08:0 (3.49) BS01 rna ? GO:0003723 ... Q9BYC8 34127662
    2 7l08:0 (3.49) BS02 ZN ? GO:0003723 ... Q9BYC8 34127662
    3 7l08:1 (3.49) BS01 rna ? GO:0003735 ... O75394 34127662
    4 7l08:2 (3.49) BS01 rna ? GO:0003735 ... Q9BQ48 34127662
    5 7l08:3 (3.49) BS01 rna ? GO:0003735 ... Q9NZE8 34127662
    6 7l08:4 (3.49) BS01 rna ? GO:0003735 ... Q9P0J6 34127662
    7 7l08:4 (3.49) BS02 ZN ? GO:0003735 ... Q9P0J6 34127662
    8 7l08:5 (3.49) BS01 rna ? GO:0003723 ... Q9BZE1 34127662
    9 7l08:6 (3.49) BS01 rna ? GO:0005515 ... Q96DV4 34127662
    10 7l08:6 (3.49) BS02 rna ? GO:0005515 ... Q96DV4 34127662
    11 7l08:8 (3.49) BS01 rna ? GO:0003723 ... Q9NQ50 34127662
    12 7l08:9 (3.49) BS01 rna ? GO:0003723 ... Q8IXM3 34127662
    13 7l08:A0 (3.49) BS01 rna ? GO:0003735 ... P82930 34127662
    14 7l08:A2 (3.49) BS01 rna ? GO:0001650 ... Q96BP2 34127662
    15 7l08:A3 (3.49) BS01 rna ? GO:0005515 ... Q9NWT8 34127662
    16 7l08:A3 (3.49) BS02 rna ? GO:0005515 ... Q9NWT8 34127662
    17 7l08:AB (3.49) BS01 rna ? GO:0003735 ... Q9Y399 34127662
    18 7l08:AB (3.49) BS02 ZN ? GO:0003735 ... Q9Y399 34127662
    19 7l08:AC (3.49) BS01 rna ? GO:0003723 ... Q96EL2 34127662
    20 7l08:AD (3.49) BS01 rna ? GO:0003723 ... P82675 34127662
    21 7l08:AE (3.49) BS01 rna ? GO:0003735 ... P82932 34127662
    22 7l08:AF (3.49) BS01 rna ? GO:0000028 ... Q9Y2R9 34127662
    23 7l08:AG (3.49) BS01 rna ? GO:0003723 ... P82933 34127662
    24 7l08:AH (3.49) BS01 rna ? GO:0003674 ... P82664 34127662
    25 7l08:AI (3.49) BS01 rna ? GO:0003723 ... P82912 34127662
    26 7l08:AJ (3.49) BS01 rna ? GO:0003723 ... O15235 34127662
    27 7l08:AK (3.49) BS01 rna ? GO:0003723 ... O60783 34127662
    28 7l08:AL (3.49) BS01 rna ? GO:0003723 ... P82914 34127662
    29 7l08:AM (3.49) BS01 rna ? GO:0003735 ... Q9Y3D3 34127662
    30 7l08:AN (3.49) BS01 rna ? GO:0003735 ... Q9Y2R5 34127662
    31 7l08:AO (3.49) BS01 rna ? GO:0003735 ... Q9Y676 34127662
    32 7l08:AO (3.49) BS02 ZN ? GO:0003735 ... Q9Y676 34127662
    33 7l08:AP (3.49) BS01 rna ? GO:0003735 ... Q9Y3D5 34127662
    34 7l08:AQ (3.49) BS01 rna ? GO:0003723 ... P82921 34127662
    35 7l08:AS (3.49) BS01 rna ? GO:0003723 ... Q9Y3D9 34127662
    36 7l08:AT (3.49) BS01 rna ? GO:0003735 ... P82663 34127662
    37 7l08:AT (3.49) BS02 ZN ? GO:0003735 ... P82663 34127662
    38 7l08:AU (3.49) BS01 rna ? GO:0003723 ... Q9BYN8 34127662
    39 7l08:AV (3.49) BS01 rna ? GO:0000049 ... Q92552 34127662
    40 7l08:AX (3.49) BS01 rna ? GO:0003723 ... P51398 34127662
    41 7l08:AX (3.49) BS02 GDP ? GO:0003723 ... P51398 34127662
    42 7l08:AZ (3.49) BS01 rna ? GO:0003735 ... Q9Y291 34127662
    43 7l08:D (3.49) BS01 rna ? GO:0003723 ... Q5T653 34127662
    44 7l08:E (3.49) BS01 rna ? GO:0003723 ... P09001 34127662
    45 7l08:F (3.49) BS01 rna ? GO:0003723 ... Q9BYD3 34127662
    46 7l08:H (3.49) BS01 rna ? GO:0003723 ... Q9BYD2 34127662
    47 7l08:I (3.49) BS01 rna ? GO:0003723 ... Q7Z7H8 34127662
    48 7l08:I (3.49) BS02 peptide ? GO:0003723 ... Q7Z7H8 34127662
    49 7l08:J (3.49) BS01 rna ? GO:0003723 ... Q9Y3B7 34127662
    50 7l08:K (3.49) BS01 rna ? GO:0003723 ... Q9BYD1 34127662
    51 7l08:L (3.49) BS01 rna ? GO:0003723 ... Q6P1L8 34127662
    52 7l08:L (3.49) BS02 rna ? GO:0003723 ... Q6P1L8 34127662
    53 7l08:M (3.49) BS01 rna ? GO:0003723 ... Q9P015 34127662
    54 7l08:N (3.49) BS01 rna ? GO:0003735 ... Q9NX20 34127662
    55 7l08:O (3.49) BS01 rna ? GO:0003735 ... Q9NRX2 34127662
    56 7l08:P (3.49) BS01 rna ? GO:0003735 ... A8K9D2 34127662
    57 7l08:P (3.49) BS02 rna ? GO:0003735 ... A8K9D2 34127662
    58 7l08:Q (3.49) BS01 rna ? GO:0003735 ... P49406 34127662
    59 7l08:R (3.49) BS01 rna ? GO:0003723 ... Q9BYC9 34127662
    60 7l08:S (3.49) BS01 rna ? GO:0003723 ... Q7Z2W9 34127662
    61 7l08:T (3.49) BS01 rna ? GO:0003735 ... E7ESL0 34127662
    62 7l08:TA (3.49) BS01 peptide ? GO:0003723 ... P52815 34127662
    63 7l08:U (3.49) BS01 rna ? GO:0001650 ... Q16540 34127662
    64 7l08:V (3.49) BS01 rna ? GO:0003723 ... Q96A35 34127662
    65 7l08:W (3.49) BS01 rna ? GO:0003723 ... Q9P0M9 34127662
    66 7l08:X (3.49) BS01 rna ? GO:0003723 ... Q13084 34127662
    67 7l08:Y (3.49) BS01 rna ? GO:0003674 ... Q9HD33 34127662
    68 7l08:Z (3.49) BS01 rna ? GO:0003735 ... Q8TCC3 34127662
    69 7l08:a (3.49) BS01 rna ? GO:0003723 ... Q9Y6G3 34127662
    70 7l08:b (3.49) BS01 rna ? GO:0003735 ... Q8N983 34127662
    71 7l08:c (3.49) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 34127662
    72 7l08:d (3.49) BS01 rna ? GO:0003723 ... Q9BRJ2 34127662
    73 7l08:f (3.49) BS01 rna ? GO:0005515 ... Q96GC5 34127662
    74 7l08:f (3.49) BS02 rna ? GO:0005515 ... Q96GC5 34127662
    75 7l08:g (3.49) BS01 rna ? GO:0003735 ... Q13405 34127662
    76 7l08:i (3.49) BS01 rna ? GO:0003735 ... Q4U2R6 34127662
    77 7l08:j (3.49) BS01 rna ? GO:0003735 ... A8K7J6 34127662
    78 7l08:l (3.49) BS01 rna ? GO:0003723 ... Q6P161 34127662
    79 7l08:o (3.49) BS01 rna ? GO:0003735 ... Q9BQC6 34127662
    80 7l08:q (3.49) BS01 rna ? GO:0005515 ... Q8TAE8 34127662
    81 7l08:r (3.49) BS01 rna ? GO:0003735 ... Q9NVS2 34127662
    82 7l08:s (3.49) BS01 rna ? GO:0003723 ... Q9NP92 34127662
    83 7l08:z (3.49) BS01 rna ? GO:0006412 ... Q96E11 34127662
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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