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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7jy8:A (2.4) BS01 dna ? GO:0000725 ... P0A7G6 33057191
    2 7jy8:A (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    3 7jy8:A (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    4 7jy8:B (2.4) BS01 dna ? GO:0000725 ... P0A7G6 33057191
    5 7jy8:B (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    6 7jy8:B (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    7 7jy8:C (2.4) BS01 dna ? GO:0000725 ... P0A7G6 33057191
    8 7jy8:C (2.4) BS02 dna ? GO:0000725 ... P0A7G6 33057191
    9 7jy8:C (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    10 7jy8:C (2.4) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    11 7jy8:D (2.4) BS01 dna ? GO:0000725 ... P0A7G6 33057191
    12 7jy8:D (2.4) BS02 dna ? GO:0000725 ... P0A7G6 33057191
    13 7jy8:D (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    14 7jy8:D (2.4) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    15 7jy8:E (2.4) BS01 dna ? GO:0000725 ... P0A7G6 33057191
    16 7jy8:E (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    17 7jy8:E (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    18 7jy8:F (2.4) BS01 dna ? GO:0000725 ... P0A7G6 33057191
    19 7jy8:F (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    20 7jy8:F (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    21 7jy8:G (2.4) BS01 dna ? GO:0000725 ... P0A7G6 33057191
    22 7jy8:G (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    23 7jy8:G (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    24 7jy8:H (2.4) BS01 dna ? GO:0000725 ... P0A7G6 33057191
    25 7jy8:H (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    26 7jy8:H (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    27 7jy8:I (2.4) BS01 dna ? GO:0000725 ... P0A7G6 33057191
    28 7jy8:I (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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