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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7jt1:8 (3.3) BS01 rna 3.1.1.29 GO:0003747 ... P40711 33144582
    2 7jt1:8 (3.3) BS02 rna 3.1.1.29 GO:0003747 ... P40711 33144582
    3 7jt1:8 (3.3) BS03 rna 3.1.1.29 GO:0003747 ... P40711 33144582
    4 7jt1:8 (3.3) BS04 rna 3.1.1.29 GO:0003747 ... P40711 33144582
    5 7jt1:B (3.3) BS01 rna ? GO:0000027 ... P0A7N4 33144582
    6 7jt1:C (3.3) BS01 rna ? GO:0000027 ... P0A7N9 33144582
    7 7jt1:D (3.3) BS01 rna ? GO:0002181 ... P0A7P5 33144582
    8 7jt1:E (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 33144582
    9 7jt1:F (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 33144582
    10 7jt1:G (3.3) BS01 rna ? GO:0000028 ... P0A7V0 33144582
    11 7jt1:H (3.3) BS01 rna ? GO:0003676 ... P0A7V3 33144582
    12 7jt1:I (3.3) BS01 rna ? GO:0000028 ... P0A7V8 33144582
    13 7jt1:J (3.3) BS01 rna ? GO:0000028 ... P0A7W1 33144582
    14 7jt1:K (3.3) BS01 rna ? GO:0003735 ... P02358 33144582
    15 7jt1:L (3.3) BS01 rna ? GO:0003723 ... P02359 33144582
    16 7jt1:M (3.3) BS01 rna ? GO:0000028 ... P0A7W7 33144582
    17 7jt1:N (3.3) BS01 rna ? GO:0000049 ... P0A7X3 33144582
    18 7jt1:O (3.3) BS01 rna ? GO:0000049 ... P0A7R5 33144582
    19 7jt1:P (3.3) BS01 rna ? GO:0002181 ... P0A7R9 33144582
    20 7jt1:Q (3.3) BS01 rna ? GO:0000049 ... P0A7S3 33144582
    21 7jt1:R (3.3) BS01 rna ? GO:0000049 ... P0A7S9 33144582
    22 7jt1:R (3.3) BS02 rna ? GO:0000049 ... P0A7S9 33144582
    23 7jt1:S (3.3) BS01 rna ? GO:0000028 ... P0AG59 33144582
    24 7jt1:T (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 33144582
    25 7jt1:T (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 33144582
    26 7jt1:U (3.3) BS01 rna ? GO:0000028 ... P0A7T3 33144582
    27 7jt1:V (3.3) BS01 rna ? GO:0000028 ... P0AG63 33144582
    28 7jt1:W (3.3) BS01 rna ? GO:0003735 ... P0A7T7 33144582
    29 7jt1:X (3.3) BS01 rna ? GO:0003723 ... P0A7U3 33144582
    30 7jt1:Y (3.3) BS01 rna ? GO:0000028 ... P0A7U7 33144582
    31 7jt1:Z (3.3) BS01 rna ? GO:0000028 ... P68679 33144582
    32 7jt1:Z (3.3) BS02 rna ? GO:0000028 ... P68679 33144582
    33 7jt1:b (3.3) BS01 rna ? GO:0000027 ... P60422 33144582
    34 7jt1:b (3.3) BS02 rna ? GO:0000027 ... P60422 33144582
    35 7jt1:c (3.3) BS01 rna ? GO:0000027 ... P60438 33144582
    36 7jt1:d (3.3) BS01 rna ? GO:0001070 ... P60723 33144582
    37 7jt1:e (3.3) BS01 rna ? GO:0000027 ... P62399 33144582
    38 7jt1:e (3.3) BS02 rna ? GO:0000027 ... P62399 33144582
    39 7jt1:f (3.3) BS01 rna ? GO:0000027 ... P0AG55 33144582
    40 7jt1:g (3.3) BS01 rna ? GO:0002181 ... P0A7R1 33144582
    41 7jt1:j (3.3) BS01 rna ? GO:0002181 ... P0AA10 33144582
    42 7jt1:k (3.3) BS01 rna ? GO:0002181 ... P0ADY3 33144582
    43 7jt1:k (3.3) BS02 rna ? GO:0002181 ... P0ADY3 33144582
    44 7jt1:l (3.3) BS01 rna ? GO:0002181 ... P02413 33144582
    45 7jt1:m (3.3) BS01 rna ? GO:0000027 ... P0ADY7 33144582
    46 7jt1:m (3.3) BS02 rna ? GO:0000027 ... P0ADY7 33144582
    47 7jt1:n (3.3) BS01 rna ? GO:0000027 ... P0AG44 33144582
    48 7jt1:o (3.3) BS01 rna ? GO:0002181 ... P0C018 33144582
    49 7jt1:o (3.3) BS02 rna ? GO:0002181 ... P0C018 33144582
    50 7jt1:p (3.3) BS01 rna ? GO:0000027 ... P0A7K6 33144582
    51 7jt1:p (3.3) BS02 rna ? GO:0000027 ... P0A7K6 33144582
    52 7jt1:q (3.3) BS01 rna ? GO:0000027 ... P0A7L3 33144582
    53 7jt1:r (3.3) BS01 rna ? GO:0002181 ... P0AG48 33144582
    54 7jt1:s (3.3) BS01 rna ? GO:0002181 ... P61175 33144582
    55 7jt1:t (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 33144582
    56 7jt1:u (3.3) BS01 rna ? GO:0000027 ... P60624 33144582
    57 7jt1:v (3.3) BS01 rna ? GO:0000027 ... P68919 33144582
    58 7jt1:w (3.3) BS01 rna ? GO:0003735 ... P0A7L8 33144582
    59 7jt1:w (3.3) BS02 rna ? GO:0003735 ... P0A7L8 33144582
    60 7jt1:x (3.3) BS01 rna ? GO:0000027 ... P0A7M2 33144582
    61 7jt1:y (3.3) BS01 rna ? GO:0000027 ... P0A7M6 33144582
    62 7jt1:z (3.3) BS01 rna ? GO:0000027 ... P0AG51 33144582
    63 7jt1:z (3.3) BS02 rna ? GO:0000027 ... P0AG51 33144582
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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