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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7jss:8 (3.7) BS01 rna 3.1.1.29 GO:0003747 ... P40711 33144582
    2 7jss:8 (3.7) BS02 rna 3.1.1.29 GO:0003747 ... P40711 33144582
    3 7jss:8 (3.7) BS03 rna 3.1.1.29 GO:0003747 ... P40711 33144582
    4 7jss:B (3.7) BS01 rna ? GO:0000027 ... P0A7N4 33144582
    5 7jss:C (3.7) BS01 rna ? GO:0000027 ... P0A7N9 33144582
    6 7jss:D (3.7) BS01 rna ? GO:0002181 ... P0A7P5 33144582
    7 7jss:E (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 33144582
    8 7jss:F (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 33144582
    9 7jss:G (3.7) BS01 rna ? GO:0000028 ... P0A7V0 33144582
    10 7jss:H (3.7) BS01 rna ? GO:0003676 ... P0A7V3 33144582
    11 7jss:I (3.7) BS01 rna ? GO:0000028 ... P0A7V8 33144582
    12 7jss:J (3.7) BS01 rna ? GO:0000028 ... P0A7W1 33144582
    13 7jss:K (3.7) BS01 rna ? GO:0003735 ... P02358 33144582
    14 7jss:L (3.7) BS01 rna ? GO:0003723 ... P02359 33144582
    15 7jss:L (3.7) BS02 rna ? GO:0003723 ... P02359 33144582
    16 7jss:M (3.7) BS01 rna ? GO:0000028 ... P0A7W7 33144582
    17 7jss:N (3.7) BS01 rna ? GO:0000049 ... P0A7X3 33144582
    18 7jss:N (3.7) BS02 rna ? GO:0000049 ... P0A7X3 33144582
    19 7jss:O (3.7) BS01 rna ? GO:0000049 ... P0A7R5 33144582
    20 7jss:P (3.7) BS01 rna ? GO:0002181 ... P0A7R9 33144582
    21 7jss:Q (3.7) BS01 rna ? GO:0000049 ... P0A7S3 33144582
    22 7jss:R (3.7) BS01 rna ? GO:0000049 ... P0A7S9 33144582
    23 7jss:S (3.7) BS01 rna ? GO:0000028 ... P0AG59 33144582
    24 7jss:T (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 33144582
    25 7jss:U (3.7) BS01 rna ? GO:0000028 ... P0A7T3 33144582
    26 7jss:V (3.7) BS01 rna ? GO:0000028 ... P0AG63 33144582
    27 7jss:W (3.7) BS01 rna ? GO:0003735 ... P0A7T7 33144582
    28 7jss:X (3.7) BS01 rna ? GO:0003723 ... P0A7U3 33144582
    29 7jss:Y (3.7) BS01 rna ? GO:0000028 ... P0A7U7 33144582
    30 7jss:Z (3.7) BS01 rna ? GO:0000028 ... P68679 33144582
    31 7jss:Z (3.7) BS02 rna ? GO:0000028 ... P68679 33144582
    32 7jss:b (3.7) BS01 rna ? GO:0000027 ... P60422 33144582
    33 7jss:c (3.7) BS01 rna ? GO:0000027 ... P60438 33144582
    34 7jss:d (3.7) BS01 rna ? GO:0001070 ... P60723 33144582
    35 7jss:e (3.7) BS01 rna ? GO:0000027 ... P62399 33144582
    36 7jss:e (3.7) BS02 rna ? GO:0000027 ... P62399 33144582
    37 7jss:f (3.7) BS01 rna ? GO:0000027 ... P0AG55 33144582
    38 7jss:g (3.7) BS01 rna ? GO:0002181 ... P0A7R1 33144582
    39 7jss:j (3.7) BS01 rna ? GO:0002181 ... P0AA10 33144582
    40 7jss:k (3.7) BS01 rna ? GO:0002181 ... P0ADY3 33144582
    41 7jss:k (3.7) BS02 rna ? GO:0002181 ... P0ADY3 33144582
    42 7jss:l (3.7) BS01 rna ? GO:0002181 ... P02413 33144582
    43 7jss:m (3.7) BS01 rna ? GO:0000027 ... P0ADY7 33144582
    44 7jss:m (3.7) BS02 rna ? GO:0000027 ... P0ADY7 33144582
    45 7jss:n (3.7) BS01 rna ? GO:0000027 ... P0AG44 33144582
    46 7jss:o (3.7) BS01 rna ? GO:0002181 ... P0C018 33144582
    47 7jss:o (3.7) BS02 rna ? GO:0002181 ... P0C018 33144582
    48 7jss:p (3.7) BS01 rna ? GO:0000027 ... P0A7K6 33144582
    49 7jss:p (3.7) BS02 rna ? GO:0000027 ... P0A7K6 33144582
    50 7jss:q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 33144582
    51 7jss:r (3.7) BS01 rna ? GO:0002181 ... P0AG48 33144582
    52 7jss:s (3.7) BS01 rna ? GO:0002181 ... P61175 33144582
    53 7jss:t (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 33144582
    54 7jss:u (3.7) BS01 rna ? GO:0000027 ... P60624 33144582
    55 7jss:v (3.7) BS01 rna ? GO:0000027 ... P68919 33144582
    56 7jss:v (3.7) BS02 rna ? GO:0000027 ... P68919 33144582
    57 7jss:w (3.7) BS01 rna ? GO:0003735 ... P0A7L8 33144582
    58 7jss:x (3.7) BS01 rna ? GO:0000027 ... P0A7M2 33144582
    59 7jss:y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 33144582
    60 7jss:z (3.7) BS01 rna ? GO:0000027 ... P0AG51 33144582
    61 7jss:z (3.7) BS02 rna ? GO:0000027 ... P0AG51 33144582
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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