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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7jil:4 (2.8) BS01 rna ? N/A A0A1M5JJE6 33330920
    2 7jil:B (2.8) BS01 rna ? GO:0002181 ... A0A1B2U0Q0 33330920
    3 7jil:C (2.8) BS01 rna ? GO:0003735 ... A0A1M5L9Q4 33330920
    4 7jil:D (2.8) BS01 rna ? GO:0003735 ... A0A1M7D775 33330920
    5 7jil:E (2.8) BS01 rna N/A GO:0003735 ... N/A 33330920
    6 7jil:E (2.8) BS02 rna N/A GO:0003735 ... N/A 33330920
    7 7jil:F (2.8) BS01 rna ? GO:0002181 ... A0A1M5L807 33330920
    8 7jil:G (2.8) BS01 rna ? GO:0003735 ... A0A1M5M9Q7 33330920
    9 7jil:J (2.8) BS01 rna ? GO:0003729 ... A0A1M5GAA6 33330920
    10 7jil:K (2.8) BS01 rna ? GO:0003735 ... A5FMZ0 33330920
    11 7jil:L (2.8) BS01 rna ? GO:0003735 ... A0A1M7D8T3 33330920
    12 7jil:M (2.8) BS01 rna ? GO:0000049 ... A0A1B2U0I0 33330920
    13 7jil:N (2.8) BS01 rna ? GO:0003735 ... A0A1M5L6R0 33330920
    14 7jil:O (2.8) BS01 rna ? GO:0003735 ... A0A1M7D8T4 33330920
    15 7jil:O (2.8) BS02 rna ? GO:0003735 ... A0A1M7D8T4 33330920
    16 7jil:P (2.8) BS01 rna ? GO:0003735 ... A0A1M5PX52 33330920
    17 7jil:P (2.8) BS02 rna ? GO:0003735 ... A0A1M5PX52 33330920
    18 7jil:Q (2.8) BS01 rna ? GO:0000027 ... A0A1B2U1H3 33330920
    19 7jil:R (2.8) BS01 rna ? GO:0003723 ... A0A1M5GFZ4 33330920
    20 7jil:S (2.8) BS01 rna ? GO:0003735 ... A0A1B2U0F3 33330920
    21 7jil:T (2.8) BS01 rna ? GO:0000027 ... A0A1J7BX85 33330920
    22 7jil:U (2.8) BS01 rna ? GO:0003723 ... A0A1B2U0F5 33330920
    23 7jil:V (2.8) BS01 rna ? GO:0003723 ... A0A1M5HDD0 33330920
    24 7jil:W (2.8) BS01 rna ? GO:0003735 ... A0A1M6R2K9 33330920
    25 7jil:X (2.8) BS01 rna ? GO:0003735 ... A0A1B2U1R1 33330920
    26 7jil:Y (2.8) BS01 rna ? GO:0003735 ... A5FMZ2 33330920
    27 7jil:Z (2.8) BS01 rna ? GO:0003735 ... A0A1M5L7Z6 33330920
    28 7jil:Z (2.8) BS02 rna ? GO:0003735 ... A0A1M5L7Z6 33330920
    29 7jil:a (2.8) BS01 rna ? GO:0003735 ... A0A1M5KIG2 33330920
    30 7jil:b (2.8) BS01 rna ? GO:0003735 ... A0A1B2U029 33330920
    31 7jil:c (2.8) BS01 rna ? GO:0003735 ... A0A1B2U200 33330920
    32 7jil:d (2.8) BS01 rna ? GO:0003735 ... A0A1B2U1E7 33330920
    33 7jil:e (2.8) BS01 rna ? GO:0003735 ... A0A1J7BZ40 33330920
    34 7jil:f (2.8) BS01 rna N/A GO:0003735 ... N/A 33330920
    35 7jil:h (2.8) BS01 rna ? GO:0003676 ... A0A1J7CBX1 33330920
    36 7jil:i (2.8) BS01 rna ? GO:0003723 ... A0A1B2U0J7 33330920
    37 7jil:j (2.8) BS01 rna ? GO:0003723 ... A0A1B2U0I9 33330920
    38 7jil:k (2.8) BS01 rna ? GO:0003735 ... A0A1J7BSW7 33330920
    39 7jil:l (2.8) BS01 rna ? GO:0000028 ... A0A1M5L9G3 33330920
    40 7jil:m (2.8) BS01 rna ? GO:0003735 ... A0A1M5L889 33330920
    41 7jil:n (2.8) BS01 rna ? GO:0003723 ... A0A1M6R974 33330920
    42 7jil:o (2.8) BS01 rna ? GO:0000049 ... A0A1J7CP29 33330920
    43 7jil:p (2.8) BS01 rna ? GO:0003735 ... A0A1J7CBV3 33330920
    44 7jil:q (2.8) BS01 rna ? GO:0000049 ... A0A0Q8NJJ8 33330920
    45 7jil:r (2.8) BS01 rna N/A GO:0003676 ... N/A 33330920
    46 7jil:r (2.8) BS02 rna N/A GO:0003676 ... N/A 33330920
    47 7jil:s (2.8) BS01 rna ? GO:0003735 ... A0A1B2U0Q7 33330920
    48 7jil:t (2.8) BS01 rna ? GO:0003735 ... A0A1M6QTP8 33330920
    49 7jil:t (2.8) BS02 rna ? GO:0003735 ... A0A1M6QTP8 33330920
    50 7jil:u (2.8) BS01 rna ? GO:0003735 ... A0A1M6QGN9 33330920
    51 7jil:v (2.8) BS01 rna ? GO:0003735 ... A0A1M5L8M4 33330920
    52 7jil:w (2.8) BS01 rna ? GO:0003735 ... A0A1B2U6N1 33330920
    53 7jil:x (2.8) BS01 rna ? GO:0000028 ... A0A1M5L8S8 33330920
    54 7jil:y (2.8) BS01 rna ? GO:0003723 ... A0A1B2U1X2 33330920
    55 7jil:z (2.8) BS01 rna ? GO:0003735 ... A0A1J7CKJ9 33330920
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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