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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 161 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ew6:1 (3.4) BS01 CLA ? GO:0009416 ... Q9SDM1 34879391
    2 7ew6:1 (3.4) BS02 CLA ? GO:0009416 ... Q9SDM1 34879391
    3 7ew6:1 (3.4) BS03 CLA ? GO:0009416 ... Q9SDM1 34879391
    4 7ew6:1 (3.4) BS04 CLA ? GO:0009416 ... Q9SDM1 34879391
    5 7ew6:1 (3.4) BS05 CLA ? GO:0009416 ... Q9SDM1 34879391
    6 7ew6:1 (3.4) BS06 CHL ? GO:0009416 ... Q9SDM1 34879391
    7 7ew6:1 (3.4) BS07 CLA ? GO:0009416 ... Q9SDM1 34879391
    8 7ew6:1 (3.4) BS08 CHL ? GO:0009416 ... Q9SDM1 34879391
    9 7ew6:1 (3.4) BS09 CLA ? GO:0009416 ... Q9SDM1 34879391
    10 7ew6:1 (3.4) BS10 CHL ? GO:0009416 ... Q9SDM1 34879391
    11 7ew6:2 (3.4) BS01 CLA ? GO:0009416 ... Q43485 34879391
    12 7ew6:2 (3.4) BS02 CLA ? GO:0009416 ... Q43485 34879391
    13 7ew6:2 (3.4) BS03 CLA ? GO:0009416 ... Q43485 34879391
    14 7ew6:2 (3.4) BS04 CLA ? GO:0009416 ... Q43485 34879391
    15 7ew6:2 (3.4) BS05 CLA ? GO:0009416 ... Q43485 34879391
    16 7ew6:2 (3.4) BS06 CLA ? GO:0009416 ... Q43485 34879391
    17 7ew6:2 (3.4) BS07 CLA ? GO:0009416 ... Q43485 34879391
    18 7ew6:2 (3.4) BS08 CHL ? GO:0009416 ... Q43485 34879391
    19 7ew6:2 (3.4) BS09 CHL ? GO:0009416 ... Q43485 34879391
    20 7ew6:2 (3.4) BS10 CLA ? GO:0009416 ... Q43485 34879391
    21 7ew6:2 (3.4) BS11 CHL ? GO:0009416 ... Q43485 34879391
    22 7ew6:2 (3.4) BS12 CHL ? GO:0009416 ... Q43485 34879391
    23 7ew6:2 (3.4) BS13 CHL ? GO:0009416 ... Q43485 34879391
    24 7ew6:3 (3.4) BS01 CLA ? GO:0009507 ... F2DAN8 34879391
    25 7ew6:3 (3.4) BS02 CHL ? GO:0009507 ... F2DAN8 34879391
    26 7ew6:3 (3.4) BS03 CLA ? GO:0009507 ... F2DAN8 34879391
    27 7ew6:3 (3.4) BS04 CLA ? GO:0009507 ... F2DAN8 34879391
    28 7ew6:3 (3.4) BS05 CLA ? GO:0009507 ... F2DAN8 34879391
    29 7ew6:3 (3.4) BS06 CLA ? GO:0009507 ... F2DAN8 34879391
    30 7ew6:3 (3.4) BS07 CLA ? GO:0009507 ... F2DAN8 34879391
    31 7ew6:3 (3.4) BS08 CLA ? GO:0009507 ... F2DAN8 34879391
    32 7ew6:3 (3.4) BS09 CLA ? GO:0009507 ... F2DAN8 34879391
    33 7ew6:3 (3.4) BS10 CHL ? GO:0009507 ... F2DAN8 34879391
    34 7ew6:3 (3.4) BS11 CLA ? GO:0009507 ... F2DAN8 34879391
    35 7ew6:3 (3.4) BS12 CLA ? GO:0009507 ... F2DAN8 34879391
    36 7ew6:3 (3.4) BS13 CLA ? GO:0009507 ... F2DAN8 34879391
    37 7ew6:5 (3.4) BS01 CHL ? GO:0009507 ... F2CW18 34879391
    38 7ew6:5 (3.4) BS02 CLA ? GO:0009507 ... F2CW18 34879391
    39 7ew6:5 (3.4) BS03 CLA ? GO:0009507 ... F2CW18 34879391
    40 7ew6:5 (3.4) BS04 CLA ? GO:0009507 ... F2CW18 34879391
    41 7ew6:5 (3.4) BS05 CLA ? GO:0009507 ... F2CW18 34879391
    42 7ew6:5 (3.4) BS06 CLA ? GO:0009507 ... F2CW18 34879391
    43 7ew6:5 (3.4) BS07 CLA ? GO:0009507 ... F2CW18 34879391
    44 7ew6:5 (3.4) BS08 CHL ? GO:0009507 ... F2CW18 34879391
    45 7ew6:5 (3.4) BS09 CHL ? GO:0009507 ... F2CW18 34879391
    46 7ew6:5 (3.4) BS10 CLA ? GO:0009507 ... F2CW18 34879391
    47 7ew6:A (3.4) BS01 CL0 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    48 7ew6:A (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    49 7ew6:A (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    50 7ew6:A (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    51 7ew6:A (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    52 7ew6:A (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    53 7ew6:A (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    54 7ew6:A (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    55 7ew6:A (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    56 7ew6:A (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    57 7ew6:A (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    58 7ew6:A (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    59 7ew6:A (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    60 7ew6:A (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    61 7ew6:A (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    62 7ew6:A (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    63 7ew6:A (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    64 7ew6:A (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    65 7ew6:A (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    66 7ew6:A (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    67 7ew6:A (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    68 7ew6:A (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    69 7ew6:A (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    70 7ew6:A (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    71 7ew6:A (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    72 7ew6:A (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    73 7ew6:A (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    74 7ew6:A (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    75 7ew6:A (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    76 7ew6:A (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    77 7ew6:A (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    78 7ew6:A (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    79 7ew6:A (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    80 7ew6:A (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    81 7ew6:A (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    82 7ew6:A (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    83 7ew6:A (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    84 7ew6:A (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    85 7ew6:A (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    86 7ew6:A (3.4) BS40 PQN 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    87 7ew6:A (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    88 7ew6:A (3.4) BS42 SF4 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    89 7ew6:A (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    90 7ew6:A (3.4) BS44 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    91 7ew6:A (3.4) BS45 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    92 7ew6:A (3.4) BS46 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    93 7ew6:A (3.4) BS47 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    94 7ew6:A (3.4) BS48 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    95 7ew6:B (3.4) BS01 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    96 7ew6:B (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    97 7ew6:B (3.4) BS03 SF4 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    98 7ew6:B (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    99 7ew6:B (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    100 7ew6:B (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    101 7ew6:B (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    102 7ew6:B (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    103 7ew6:B (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    104 7ew6:B (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    105 7ew6:B (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    106 7ew6:B (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    107 7ew6:B (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    108 7ew6:B (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    109 7ew6:B (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    110 7ew6:B (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    111 7ew6:B (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    112 7ew6:B (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    113 7ew6:B (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    114 7ew6:B (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    115 7ew6:B (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    116 7ew6:B (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    117 7ew6:B (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    118 7ew6:B (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    119 7ew6:B (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    120 7ew6:B (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    121 7ew6:B (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    122 7ew6:B (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    123 7ew6:B (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    124 7ew6:B (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    125 7ew6:B (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    126 7ew6:B (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    127 7ew6:B (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    128 7ew6:B (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    129 7ew6:B (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    130 7ew6:B (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    131 7ew6:B (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    132 7ew6:B (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    133 7ew6:B (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    134 7ew6:B (3.4) BS40 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    135 7ew6:B (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    136 7ew6:B (3.4) BS42 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    137 7ew6:B (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    138 7ew6:B (3.4) BS44 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    139 7ew6:B (3.4) BS45 PQN 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    140 7ew6:B (3.4) BS46 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    141 7ew6:C (3.4) BS01 SF4 1.97.1.12 GO:0009055 ... P69416 34879391
    142 7ew6:C (3.4) BS02 SF4 1.97.1.12 GO:0009055 ... P69416 34879391
    143 7ew6:F (3.4) BS01 CLA ? GO:0009507 ... P13192 34879391
    144 7ew6:F (3.4) BS02 CLA ? GO:0009507 ... P13192 34879391
    145 7ew6:F (3.4) BS03 CLA ? GO:0009507 ... P13192 34879391
    146 7ew6:F (3.4) BS04 CLA ? GO:0009507 ... P13192 34879391
    147 7ew6:F (3.4) BS05 CLA ? GO:0009507 ... P13192 34879391
    148 7ew6:F (3.4) BS06 CLA ? GO:0009507 ... P13192 34879391
    149 7ew6:I (3.4) BS01 CLA ? GO:0009507 ... P13165 34879391
    150 7ew6:J (3.4) BS01 CLA ? GO:0009507 ... A1E9L0 34879391
    151 7ew6:J (3.4) BS02 CLA ? GO:0009507 ... A1E9L0 34879391
    152 7ew6:J (3.4) BS03 CLA ? GO:0009507 ... A1E9L0 34879391
    153 7ew6:K (3.4) BS01 CLA ? GO:0009507 ... P36886 34879391
    154 7ew6:K (3.4) BS02 CLA ? GO:0009507 ... P36886 34879391
    155 7ew6:K (3.4) BS03 CLA ? GO:0009507 ... P36886 34879391
    156 7ew6:K (3.4) BS04 CLA ? GO:0009507 ... P36886 34879391
    157 7ew6:K (3.4) BS05 CLA ? GO:0009507 ... P36886 34879391
    158 7ew6:L (3.4) BS01 CLA ? GO:0009507 ... P23993 34879391
    159 7ew6:L (3.4) BS02 CLA ? GO:0009507 ... P23993 34879391
    160 7ew6:L (3.4) BS03 CLA ? GO:0009507 ... P23993 34879391
    161 7ew6:L (3.4) BS04 CLA ? GO:0009507 ... P23993 34879391
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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