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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7dy2:A (3.04) BS01 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    2 7dy2:A (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    3 7dy2:A (3.04) BS03 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    4 7dy2:A (3.04) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    5 7dy2:B (3.04) BS01 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    6 7dy2:B (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    7 7dy2:B (3.04) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    8 7dy2:B (3.04) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    9 7dy2:C (3.04) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    10 7dy2:C (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    11 7dy2:C (3.04) BS03 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    12 7dy2:C (3.04) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    13 7dy2:C (3.04) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    14 7dy2:D (3.04) BS01 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    15 7dy2:D (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    16 7dy2:D (3.04) BS03 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    17 7dy2:D (3.04) BS04 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    18 7dy2:D (3.04) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    19 7dy2:E (3.04) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    20 7dy2:E (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    21 7dy2:E (3.04) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    22 7dy2:E (3.04) BS04 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    23 7dy2:E (3.04) BS05 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    24 7dy2:F (3.04) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    25 7dy2:F (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    26 7dy2:F (3.04) BS03 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    27 7dy2:F (3.04) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    28 7dy2:G (3.04) BS01 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    29 7dy2:G (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    30 7dy2:G (3.04) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    31 7dy2:G (3.04) BS04 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    32 7dy2:G (3.04) BS05 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    33 7dy2:H (3.04) BS01 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    34 7dy2:H (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    35 7dy2:H (3.04) BS03 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    36 7dy2:H (3.04) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    37 7dy2:H (3.04) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    38 7dy2:I (3.04) BS01 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    39 7dy2:I (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    40 7dy2:I (3.04) BS03 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    41 7dy2:I (3.04) BS04 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    42 7dy2:J (3.04) BS01 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    43 7dy2:J (3.04) BS02 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    44 7dy2:J (3.04) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    45 7dy2:J (3.04) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    46 7dy2:J (3.04) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    47 7dy2:K (3.04) BS01 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    48 7dy2:K (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    49 7dy2:K (3.04) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    50 7dy2:K (3.04) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    51 7dy2:L (3.04) BS01 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    52 7dy2:L (3.04) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    53 7dy2:L (3.04) BS03 ADP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    54 7dy2:L (3.04) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35427168
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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