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BioLiP
Download all results in tab-seperated text for 114 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7dr0:A (3.3) BS01 CL0 1.97.1.12 GO:0000287 ... P48112 N/A
    2 7dr0:A (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    3 7dr0:A (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    4 7dr0:A (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    5 7dr0:A (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    6 7dr0:A (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    7 7dr0:A (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    8 7dr0:A (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    9 7dr0:A (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    10 7dr0:A (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    11 7dr0:A (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    12 7dr0:A (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    13 7dr0:A (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    14 7dr0:A (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    15 7dr0:A (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    16 7dr0:A (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    17 7dr0:A (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    18 7dr0:A (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    19 7dr0:A (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    20 7dr0:A (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    21 7dr0:A (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    22 7dr0:A (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    23 7dr0:A (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    24 7dr0:A (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    25 7dr0:A (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    26 7dr0:A (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    27 7dr0:A (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    28 7dr0:A (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    29 7dr0:A (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    30 7dr0:A (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    31 7dr0:A (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    32 7dr0:A (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    33 7dr0:A (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    34 7dr0:A (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    35 7dr0:A (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    36 7dr0:A (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    37 7dr0:A (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    38 7dr0:A (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    39 7dr0:A (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    40 7dr0:A (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    41 7dr0:A (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    42 7dr0:A (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    43 7dr0:A (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    44 7dr0:A (3.3) BS44 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    45 7dr0:A (3.3) BS45 PQN 1.97.1.12 GO:0000287 ... P48112 N/A
    46 7dr0:A (3.3) BS46 SF4 1.97.1.12 GO:0000287 ... P48112 N/A
    47 7dr0:A (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    48 7dr0:A (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    49 7dr0:A (3.3) BS49 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    50 7dr0:A (3.3) BS50 CLA 1.97.1.12 GO:0000287 ... P48112 N/A
    51 7dr0:B (3.3) BS01 peptide 1.97.1.12 GO:0000287 ... P48113 N/A
    52 7dr0:B (3.3) BS02 CL0 1.97.1.12 GO:0000287 ... P48113 N/A
    53 7dr0:B (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    54 7dr0:B (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    55 7dr0:B (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    56 7dr0:B (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    57 7dr0:B (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    58 7dr0:B (3.3) BS08 SF4 1.97.1.12 GO:0000287 ... P48113 N/A
    59 7dr0:B (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    60 7dr0:B (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    61 7dr0:B (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    62 7dr0:B (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    63 7dr0:B (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    64 7dr0:B (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    65 7dr0:B (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    66 7dr0:B (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    67 7dr0:B (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    68 7dr0:B (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    69 7dr0:B (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    70 7dr0:B (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    71 7dr0:B (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    72 7dr0:B (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    73 7dr0:B (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    74 7dr0:B (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    75 7dr0:B (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    76 7dr0:B (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    77 7dr0:B (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    78 7dr0:B (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    79 7dr0:B (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    80 7dr0:B (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    81 7dr0:B (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    82 7dr0:B (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    83 7dr0:B (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    84 7dr0:B (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    85 7dr0:B (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    86 7dr0:B (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    87 7dr0:B (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    88 7dr0:B (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    89 7dr0:B (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    90 7dr0:B (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    91 7dr0:B (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    92 7dr0:B (3.3) BS42 PQN 1.97.1.12 GO:0000287 ... P48113 N/A
    93 7dr0:B (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    94 7dr0:C (3.3) BS01 SF4 1.97.1.12 GO:0009055 ... P31173 N/A
    95 7dr0:C (3.3) BS02 SF4 1.97.1.12 GO:0009055 ... P31173 N/A
    96 7dr0:F (3.3) BS01 CLA ? GO:0009522 ... P48115 N/A
    97 7dr0:F (3.3) BS02 CLA ? GO:0009522 ... P48115 N/A
    98 7dr0:F (3.3) BS03 CLA ? GO:0009522 ... P48115 N/A
    99 7dr0:F (3.3) BS04 CLA ? GO:0009522 ... P48115 N/A
    100 7dr0:F (3.3) BS05 CLA ? GO:0009522 ... P48115 N/A
    101 7dr0:I (3.3) BS01 CLA ? GO:0009522 ... P48116 N/A
    102 7dr0:I (3.3) BS02 CLA ? GO:0009522 ... P48116 N/A
    103 7dr0:J (3.3) BS01 CLA ? GO:0009522 ... P48117 N/A
    104 7dr0:J (3.3) BS02 CLA ? GO:0009522 ... P48117 N/A
    105 7dr0:K (3.3) BS01 CLA N/A GO:0009522 ... N/A N/A
    106 7dr0:K (3.3) BS02 CLA N/A GO:0009522 ... N/A N/A
    107 7dr0:K (3.3) BS03 CLA N/A GO:0009522 ... N/A N/A
    108 7dr0:L (3.3) BS01 CLA N/A GO:0009522 ... N/A N/A
    109 7dr0:L (3.3) BS02 CLA N/A GO:0009522 ... N/A N/A
    110 7dr0:L (3.3) BS03 CLA N/A GO:0009522 ... N/A N/A
    111 7dr0:L (3.3) BS04 CLA N/A GO:0009522 ... N/A N/A
    112 7dr0:L (3.3) BS05 CLA N/A GO:0009522 ... N/A N/A
    113 7dr0:L (3.3) BS06 CLA N/A GO:0009522 ... N/A N/A
    114 7dr0:L (3.3) BS07 CLA N/A GO:0009522 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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