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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 359 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7d0j:1 (3.42) BS01 CHL ? GO:0009765 ... Q05093 33597543
    2 7d0j:1 (3.42) BS02 CLA ? GO:0009765 ... Q05093 33597543
    3 7d0j:1 (3.42) BS03 CLA ? GO:0009765 ... Q05093 33597543
    4 7d0j:1 (3.42) BS04 CLA ? GO:0009765 ... Q05093 33597543
    5 7d0j:1 (3.42) BS05 CLA ? GO:0009765 ... Q05093 33597543
    6 7d0j:1 (3.42) BS06 CHL ? GO:0009765 ... Q05093 33597543
    7 7d0j:1 (3.42) BS07 CLA ? GO:0009765 ... Q05093 33597543
    8 7d0j:1 (3.42) BS08 CLA ? GO:0009765 ... Q05093 33597543
    9 7d0j:1 (3.42) BS09 CLA ? GO:0009765 ... Q05093 33597543
    10 7d0j:1 (3.42) BS10 CLA ? GO:0009765 ... Q05093 33597543
    11 7d0j:1 (3.42) BS11 CLA ? GO:0009765 ... Q05093 33597543
    12 7d0j:1 (3.42) BS12 CLA ? GO:0009765 ... Q05093 33597543
    13 7d0j:1 (3.42) BS13 CLA ? GO:0009765 ... Q05093 33597543
    14 7d0j:2 (3.42) BS01 CLA ? GO:0009765 ... A8IKC8 33597543
    15 7d0j:2 (3.42) BS02 CLA ? GO:0009765 ... A8IKC8 33597543
    16 7d0j:2 (3.42) BS03 CLA ? GO:0009765 ... A8IKC8 33597543
    17 7d0j:2 (3.42) BS04 CLA ? GO:0009765 ... A8IKC8 33597543
    18 7d0j:2 (3.42) BS05 CLA ? GO:0009765 ... A8IKC8 33597543
    19 7d0j:2 (3.42) BS06 CLA ? GO:0009765 ... A8IKC8 33597543
    20 7d0j:2 (3.42) BS07 CLA ? GO:0009765 ... A8IKC8 33597543
    21 7d0j:2 (3.42) BS08 CLA ? GO:0009765 ... A8IKC8 33597543
    22 7d0j:2 (3.42) BS09 CLA ? GO:0009765 ... A8IKC8 33597543
    23 7d0j:2 (3.42) BS10 CLA ? GO:0009765 ... A8IKC8 33597543
    24 7d0j:2 (3.42) BS11 CLA ? GO:0009765 ... A8IKC8 33597543
    25 7d0j:2 (3.42) BS12 CLA ? GO:0009765 ... A8IKC8 33597543
    26 7d0j:3 (3.42) BS01 CLA N/A GO:0009765 ... N/A 33597543
    27 7d0j:3 (3.42) BS02 CLA N/A GO:0009765 ... N/A 33597543
    28 7d0j:3 (3.42) BS03 CLA N/A GO:0009765 ... N/A 33597543
    29 7d0j:3 (3.42) BS04 CLA N/A GO:0009765 ... N/A 33597543
    30 7d0j:3 (3.42) BS05 CLA N/A GO:0009765 ... N/A 33597543
    31 7d0j:3 (3.42) BS06 CLA N/A GO:0009765 ... N/A 33597543
    32 7d0j:3 (3.42) BS07 CHL N/A GO:0009765 ... N/A 33597543
    33 7d0j:3 (3.42) BS08 CLA N/A GO:0009765 ... N/A 33597543
    34 7d0j:3 (3.42) BS09 CLA N/A GO:0009765 ... N/A 33597543
    35 7d0j:3 (3.42) BS10 CLA N/A GO:0009765 ... N/A 33597543
    36 7d0j:3 (3.42) BS11 CLA N/A GO:0009765 ... N/A 33597543
    37 7d0j:3 (3.42) BS12 CLA N/A GO:0009765 ... N/A 33597543
    38 7d0j:3 (3.42) BS13 CLA N/A GO:0009765 ... N/A 33597543
    39 7d0j:3 (3.42) BS14 CLA N/A GO:0009765 ... N/A 33597543
    40 7d0j:4 (3.42) BS01 CLA ? GO:0009765 ... Q75VZ0 33597543
    41 7d0j:4 (3.42) BS02 CLA ? GO:0009765 ... Q75VZ0 33597543
    42 7d0j:4 (3.42) BS03 CLA ? GO:0009765 ... Q75VZ0 33597543
    43 7d0j:4 (3.42) BS04 CHL ? GO:0009765 ... Q75VZ0 33597543
    44 7d0j:4 (3.42) BS05 CHL ? GO:0009765 ... Q75VZ0 33597543
    45 7d0j:4 (3.42) BS06 CHL ? GO:0009765 ... Q75VZ0 33597543
    46 7d0j:4 (3.42) BS07 CLA ? GO:0009765 ... Q75VZ0 33597543
    47 7d0j:4 (3.42) BS08 CLA ? GO:0009765 ... Q75VZ0 33597543
    48 7d0j:4 (3.42) BS09 CLA ? GO:0009765 ... Q75VZ0 33597543
    49 7d0j:4 (3.42) BS10 CLA ? GO:0009765 ... Q75VZ0 33597543
    50 7d0j:4 (3.42) BS11 CLA ? GO:0009765 ... Q75VZ0 33597543
    51 7d0j:4 (3.42) BS12 CLA ? GO:0009765 ... Q75VZ0 33597543
    52 7d0j:4 (3.42) BS13 CHL ? GO:0009765 ... Q75VZ0 33597543
    53 7d0j:4 (3.42) BS14 CHL ? GO:0009765 ... Q75VZ0 33597543
    54 7d0j:4 (3.42) BS15 CLA ? GO:0009765 ... Q75VZ0 33597543
    55 7d0j:5 (3.42) BS01 CLA ? GO:0009765 ... Q75VY8 33597543
    56 7d0j:5 (3.42) BS02 CLA ? GO:0009765 ... Q75VY8 33597543
    57 7d0j:5 (3.42) BS03 CLA ? GO:0009765 ... Q75VY8 33597543
    58 7d0j:5 (3.42) BS04 CLA ? GO:0009765 ... Q75VY8 33597543
    59 7d0j:5 (3.42) BS05 CLA ? GO:0009765 ... Q75VY8 33597543
    60 7d0j:5 (3.42) BS06 CLA ? GO:0009765 ... Q75VY8 33597543
    61 7d0j:5 (3.42) BS07 CHL ? GO:0009765 ... Q75VY8 33597543
    62 7d0j:5 (3.42) BS08 CHL ? GO:0009765 ... Q75VY8 33597543
    63 7d0j:5 (3.42) BS09 CLA ? GO:0009765 ... Q75VY8 33597543
    64 7d0j:5 (3.42) BS10 CLA ? GO:0009765 ... Q75VY8 33597543
    65 7d0j:5 (3.42) BS11 CLA ? GO:0009765 ... Q75VY8 33597543
    66 7d0j:5 (3.42) BS12 CLA ? GO:0009765 ... Q75VY8 33597543
    67 7d0j:5 (3.42) BS13 CLA ? GO:0009765 ... Q75VY8 33597543
    68 7d0j:5 (3.42) BS14 CLA ? GO:0009765 ... Q75VY8 33597543
    69 7d0j:5 (3.42) BS15 CLA ? GO:0009765 ... Q75VY8 33597543
    70 7d0j:5 (3.42) BS16 CLA ? GO:0009765 ... Q75VY8 33597543
    71 7d0j:5 (3.42) BS17 CHL ? GO:0009765 ... Q75VY8 33597543
    72 7d0j:5 (3.42) BS18 CLA ? GO:0009765 ... Q75VY8 33597543
    73 7d0j:5 (3.42) BS19 CLA ? GO:0009765 ... Q75VY8 33597543
    74 7d0j:5 (3.42) BS20 CLA ? GO:0009765 ... Q75VY8 33597543
    75 7d0j:6 (3.42) BS01 CLA ? GO:0009765 ... Q75VY6 33597543
    76 7d0j:6 (3.42) BS02 CLA ? GO:0009765 ... Q75VY6 33597543
    77 7d0j:6 (3.42) BS03 CLA ? GO:0009765 ... Q75VY6 33597543
    78 7d0j:6 (3.42) BS04 CLA ? GO:0009765 ... Q75VY6 33597543
    79 7d0j:6 (3.42) BS05 CLA ? GO:0009765 ... Q75VY6 33597543
    80 7d0j:6 (3.42) BS06 CHL ? GO:0009765 ... Q75VY6 33597543
    81 7d0j:6 (3.42) BS07 CHL ? GO:0009765 ... Q75VY6 33597543
    82 7d0j:6 (3.42) BS08 CHL ? GO:0009765 ... Q75VY6 33597543
    83 7d0j:6 (3.42) BS09 CLA ? GO:0009765 ... Q75VY6 33597543
    84 7d0j:6 (3.42) BS10 CLA ? GO:0009765 ... Q75VY6 33597543
    85 7d0j:6 (3.42) BS11 CLA ? GO:0009765 ... Q75VY6 33597543
    86 7d0j:6 (3.42) BS12 CLA ? GO:0009765 ... Q75VY6 33597543
    87 7d0j:6 (3.42) BS13 CLA ? GO:0009765 ... Q75VY6 33597543
    88 7d0j:6 (3.42) BS14 CLA ? GO:0009765 ... Q75VY6 33597543
    89 7d0j:6 (3.42) BS15 CLA ? GO:0009765 ... Q75VY6 33597543
    90 7d0j:6 (3.42) BS16 CHL ? GO:0009765 ... Q75VY6 33597543
    91 7d0j:6 (3.42) BS17 CLA ? GO:0009765 ... Q75VY6 33597543
    92 7d0j:6 (3.42) BS18 CLA ? GO:0009765 ... Q75VY6 33597543
    93 7d0j:7 (3.42) BS01 CLA ? GO:0009765 ... Q75VY4 33597543
    94 7d0j:7 (3.42) BS02 CLA ? GO:0009765 ... Q75VY4 33597543
    95 7d0j:7 (3.42) BS03 CLA ? GO:0009765 ... Q75VY4 33597543
    96 7d0j:7 (3.42) BS04 CLA ? GO:0009765 ... Q75VY4 33597543
    97 7d0j:7 (3.42) BS05 CLA ? GO:0009765 ... Q75VY4 33597543
    98 7d0j:7 (3.42) BS06 CHL ? GO:0009765 ... Q75VY4 33597543
    99 7d0j:7 (3.42) BS07 CLA ? GO:0009765 ... Q75VY4 33597543
    100 7d0j:7 (3.42) BS08 CLA ? GO:0009765 ... Q75VY4 33597543
    101 7d0j:7 (3.42) BS09 CLA ? GO:0009765 ... Q75VY4 33597543
    102 7d0j:7 (3.42) BS10 CLA ? GO:0009765 ... Q75VY4 33597543
    103 7d0j:7 (3.42) BS11 CLA ? GO:0009765 ... Q75VY4 33597543
    104 7d0j:7 (3.42) BS12 CLA ? GO:0009765 ... Q75VY4 33597543
    105 7d0j:7 (3.42) BS13 CLA ? GO:0009765 ... Q75VY4 33597543
    106 7d0j:7 (3.42) BS14 CLA ? GO:0009765 ... Q75VY4 33597543
    107 7d0j:7 (3.42) BS15 CLA ? GO:0009765 ... Q75VY4 33597543
    108 7d0j:7 (3.42) BS16 CLA ? GO:0009765 ... Q75VY4 33597543
    109 7d0j:8 (3.42) BS01 CHL ? GO:0009765 ... Q75VY7 33597543
    110 7d0j:8 (3.42) BS02 CLA ? GO:0009765 ... Q75VY7 33597543
    111 7d0j:8 (3.42) BS03 CLA ? GO:0009765 ... Q75VY7 33597543
    112 7d0j:8 (3.42) BS04 CLA ? GO:0009765 ... Q75VY7 33597543
    113 7d0j:8 (3.42) BS05 CHL ? GO:0009765 ... Q75VY7 33597543
    114 7d0j:8 (3.42) BS06 CLA ? GO:0009765 ... Q75VY7 33597543
    115 7d0j:8 (3.42) BS07 CLA ? GO:0009765 ... Q75VY7 33597543
    116 7d0j:8 (3.42) BS08 CLA ? GO:0009765 ... Q75VY7 33597543
    117 7d0j:8 (3.42) BS09 CLA ? GO:0009765 ... Q75VY7 33597543
    118 7d0j:8 (3.42) BS10 CLA ? GO:0009765 ... Q75VY7 33597543
    119 7d0j:8 (3.42) BS11 CLA ? GO:0009765 ... Q75VY7 33597543
    120 7d0j:8 (3.42) BS12 CLA ? GO:0009765 ... Q75VY7 33597543
    121 7d0j:8 (3.42) BS13 CLA ? GO:0009765 ... Q75VY7 33597543
    122 7d0j:9 (3.42) BS01 CLA ? GO:0009765 ... Q8S567 33597543
    123 7d0j:9 (3.42) BS02 CLA ? GO:0009765 ... Q8S567 33597543
    124 7d0j:9 (3.42) BS03 CLA ? GO:0009765 ... Q8S567 33597543
    125 7d0j:9 (3.42) BS04 CLA ? GO:0009765 ... Q8S567 33597543
    126 7d0j:9 (3.42) BS05 CLA ? GO:0009765 ... Q8S567 33597543
    127 7d0j:9 (3.42) BS06 CLA ? GO:0009765 ... Q8S567 33597543
    128 7d0j:9 (3.42) BS07 CLA ? GO:0009765 ... Q8S567 33597543
    129 7d0j:9 (3.42) BS08 CHL ? GO:0009765 ... Q8S567 33597543
    130 7d0j:9 (3.42) BS09 CHL ? GO:0009765 ... Q8S567 33597543
    131 7d0j:9 (3.42) BS10 CLA ? GO:0009765 ... Q8S567 33597543
    132 7d0j:9 (3.42) BS11 CLA ? GO:0009765 ... Q8S567 33597543
    133 7d0j:9 (3.42) BS12 CLA ? GO:0009765 ... Q8S567 33597543
    134 7d0j:9 (3.42) BS13 CLA ? GO:0009765 ... Q8S567 33597543
    135 7d0j:A (3.42) BS01 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    136 7d0j:A (3.42) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    137 7d0j:A (3.42) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    138 7d0j:A (3.42) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    139 7d0j:A (3.42) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    140 7d0j:A (3.42) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    141 7d0j:A (3.42) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    142 7d0j:A (3.42) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    143 7d0j:A (3.42) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    144 7d0j:A (3.42) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    145 7d0j:A (3.42) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    146 7d0j:A (3.42) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    147 7d0j:A (3.42) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    148 7d0j:A (3.42) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    149 7d0j:A (3.42) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    150 7d0j:A (3.42) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    151 7d0j:A (3.42) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    152 7d0j:A (3.42) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    153 7d0j:A (3.42) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    154 7d0j:A (3.42) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    155 7d0j:A (3.42) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    156 7d0j:A (3.42) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    157 7d0j:A (3.42) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    158 7d0j:A (3.42) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    159 7d0j:A (3.42) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    160 7d0j:A (3.42) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    161 7d0j:A (3.42) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    162 7d0j:A (3.42) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    163 7d0j:A (3.42) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    164 7d0j:A (3.42) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    165 7d0j:A (3.42) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    166 7d0j:A (3.42) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    167 7d0j:A (3.42) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    168 7d0j:A (3.42) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    169 7d0j:A (3.42) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    170 7d0j:A (3.42) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    171 7d0j:A (3.42) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    172 7d0j:A (3.42) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    173 7d0j:A (3.42) BS39 PQN 1.97.1.12 GO:0000287 ... P12154 33597543
    174 7d0j:A (3.42) BS40 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    175 7d0j:A (3.42) BS41 SF4 1.97.1.12 GO:0000287 ... P12154 33597543
    176 7d0j:A (3.42) BS42 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    177 7d0j:A (3.42) BS43 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    178 7d0j:A (3.42) BS44 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    179 7d0j:A (3.42) BS45 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    180 7d0j:A (3.42) BS46 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    181 7d0j:A (3.42) BS47 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    182 7d0j:A (3.42) BS48 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    183 7d0j:B (3.42) BS01 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    184 7d0j:B (3.42) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    185 7d0j:B (3.42) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    186 7d0j:B (3.42) BS04 SF4 1.97.1.12 GO:0000287 ... P09144 33597543
    187 7d0j:B (3.42) BS05 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    188 7d0j:B (3.42) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    189 7d0j:B (3.42) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    190 7d0j:B (3.42) BS08 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    191 7d0j:B (3.42) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    192 7d0j:B (3.42) BS10 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    193 7d0j:B (3.42) BS11 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    194 7d0j:B (3.42) BS12 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    195 7d0j:B (3.42) BS13 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    196 7d0j:B (3.42) BS14 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    197 7d0j:B (3.42) BS15 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    198 7d0j:B (3.42) BS16 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    199 7d0j:B (3.42) BS17 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    200 7d0j:B (3.42) BS18 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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