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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7cpu:LA (2.82) BS01 rna ? GO:0002181 ... P62918 36517592
    2 7cpu:LA (2.82) BS02 rna ? GO:0002181 ... P62918 36517592
    3 7cpu:LA (2.82) BS03 MG ? GO:0002181 ... P62918 36517592
    4 7cpu:LB (2.82) BS01 rna ? GO:0002181 ... P27659 36517592
    5 7cpu:LC (2.82) BS01 rna ? GO:0002181 ... Q9D8E6 36517592
    6 7cpu:LC (2.82) BS02 rna ? GO:0002181 ... Q9D8E6 36517592
    7 7cpu:LD (2.82) BS01 rna ? GO:0002181 ... P47962 36517592
    8 7cpu:LD (2.82) BS02 rna ? GO:0002181 ... P47962 36517592
    9 7cpu:LE (2.82) BS01 rna ? GO:0002181 ... P47911 36517592
    10 7cpu:LF (2.82) BS01 rna ? GO:0000463 ... P14148 36517592
    11 7cpu:LF (2.82) BS02 rna ? GO:0000463 ... P14148 36517592
    12 7cpu:LG (2.82) BS01 rna ? GO:0002181 ... P12970 36517592
    13 7cpu:LG (2.82) BS02 rna ? GO:0002181 ... P12970 36517592
    14 7cpu:LH (2.82) BS01 rna ? GO:0002181 ... P51410 36517592
    15 7cpu:LI (2.82) BS01 rna ? GO:0003735 ... Q6ZWV3 36517592
    16 7cpu:LI (2.82) BS02 rna ? GO:0003735 ... Q6ZWV3 36517592
    17 7cpu:LJ (2.82) BS01 rna ? GO:0000027 ... Q9CXW4 36517592
    18 7cpu:LJ (2.82) BS02 rna ? GO:0000027 ... Q9CXW4 36517592
    19 7cpu:LL (2.82) BS01 rna ? GO:0001824 ... P47963 36517592
    20 7cpu:LL (2.82) BS02 rna ? GO:0001824 ... P47963 36517592
    21 7cpu:LM (2.82) BS01 rna ? GO:0002181 ... Q9CR57 36517592
    22 7cpu:LN (2.82) BS01 rna ? GO:0002181 ... Q9CZM2 36517592
    23 7cpu:LN (2.82) BS02 rna ? GO:0002181 ... Q9CZM2 36517592
    24 7cpu:LO (2.82) BS01 rna ? GO:0002181 ... P19253 36517592
    25 7cpu:LP (2.82) BS01 rna ? GO:0002181 ... Q9CPR4 36517592
    26 7cpu:LP (2.82) BS02 rna ? GO:0002181 ... Q9CPR4 36517592
    27 7cpu:LQ (2.82) BS01 rna ? GO:0002181 ... P35980 36517592
    28 7cpu:LR (2.82) BS01 rna ? GO:0002181 ... P84099 36517592
    29 7cpu:LR (2.82) BS02 rna ? GO:0002181 ... P84099 36517592
    30 7cpu:LS (2.82) BS01 rna ? GO:0002181 ... P62717 36517592
    31 7cpu:LS (2.82) BS02 rna ? GO:0002181 ... P62717 36517592
    32 7cpu:LT (2.82) BS01 rna ? GO:0002181 ... O09167 36517592
    33 7cpu:LT (2.82) BS02 rna ? GO:0002181 ... O09167 36517592
    34 7cpu:LT (2.82) BS03 MG ? GO:0002181 ... O09167 36517592
    35 7cpu:LU (2.82) BS01 rna ? GO:0003723 ... P67984 36517592
    36 7cpu:LV (2.82) BS01 rna ? GO:0000122 ... P62830 36517592
    37 7cpu:LV (2.82) BS02 rna ? GO:0000122 ... P62830 36517592
    38 7cpu:LV (2.82) BS03 MG ? GO:0000122 ... P62830 36517592
    39 7cpu:LW (2.82) BS01 rna ? GO:0000027 ... Q8BP67 36517592
    40 7cpu:LX (2.82) BS01 rna ? GO:0002181 ... P62751 36517592
    41 7cpu:LX (2.82) BS02 rna ? GO:0002181 ... P62751 36517592
    42 7cpu:LY (2.82) BS01 rna ? GO:0002181 ... P61255 36517592
    43 7cpu:LY (2.82) BS02 rna ? GO:0002181 ... P61255 36517592
    44 7cpu:LZ (2.82) BS01 rna ? GO:0002181 ... P61358 36517592
    45 7cpu:La (2.82) BS01 rna ? GO:0002181 ... P14115 36517592
    46 7cpu:Lb (2.82) BS01 rna ? GO:0002181 ... P47915 36517592
    47 7cpu:Lc (2.82) BS01 rna ? GO:0002181 ... P62889 36517592
    48 7cpu:Ld (2.82) BS01 rna ? GO:0002181 ... P62900 36517592
    49 7cpu:Le (2.82) BS01 rna ? GO:0002181 ... P62911 36517592
    50 7cpu:Le (2.82) BS02 MG ? GO:0002181 ... P62911 36517592
    51 7cpu:Lf (2.82) BS01 rna ? GO:0002181 ... O55142 36517592
    52 7cpu:Lf (2.82) BS02 MG ? GO:0002181 ... O55142 36517592
    53 7cpu:Lg (2.82) BS01 rna ? GO:0002181 ... Q9D1R9 36517592
    54 7cpu:Lg (2.82) BS02 MG ? GO:0002181 ... Q9D1R9 36517592
    55 7cpu:Lh (2.82) BS01 rna ? GO:0000463 ... Q6ZWV7 36517592
    56 7cpu:Lh (2.82) BS02 rna ? GO:0000463 ... Q6ZWV7 36517592
    57 7cpu:Li (2.82) BS01 rna ? GO:0002181 ... P47964 36517592
    58 7cpu:Lj (2.82) BS01 rna ? GO:0002181 ... Q9D823 36517592
    59 7cpu:Lj (2.82) BS02 rna ? GO:0002181 ... Q9D823 36517592
    60 7cpu:Lj (2.82) BS03 ZN ? GO:0002181 ... Q9D823 36517592
    61 7cpu:Lk (2.82) BS01 rna ? GO:0001501 ... Q9JJI8 36517592
    62 7cpu:Ll (2.82) BS01 rna ? GO:0003735 ... Q505A8 36517592
    63 7cpu:Ll (2.82) BS02 rna ? GO:0003735 ... Q505A8 36517592
    64 7cpu:Lm (2.82) BS01 rna ? GO:0002181 ... P62984 36517592
    65 7cpu:Lm (2.82) BS02 ZN ? GO:0002181 ... P62984 36517592
    66 7cpu:Lo (2.82) BS01 rna ? GO:0002181 ... P83882 36517592
    67 7cpu:Lo (2.82) BS02 rna ? GO:0002181 ... P83882 36517592
    68 7cpu:Lo (2.82) BS03 ZN ? GO:0002181 ... P83882 36517592
    69 7cpu:Lp (2.82) BS01 rna ? GO:0002181 ... P61514 36517592
    70 7cpu:Lp (2.82) BS02 ZN ? GO:0002181 ... P61514 36517592
    71 7cpu:Lr (2.82) BS01 rna ? GO:0002181 ... P41105 36517592
    72 7cpu:SA (2.82) BS01 rna ? GO:0000028 ... P14206 36517592
    73 7cpu:SB (2.82) BS01 rna ? GO:0002181 ... P97351 36517592
    74 7cpu:SB (2.82) BS02 rna ? GO:0002181 ... P97351 36517592
    75 7cpu:SC (2.82) BS01 rna ? GO:0002181 ... P25444 36517592
    76 7cpu:SD (2.82) BS01 rna 4.2.99.18 GO:0000977 ... P62908 36517592
    77 7cpu:SE (2.82) BS01 rna ? GO:0002181 ... P62702 36517592
    78 7cpu:SF (2.82) BS01 rna ? GO:0002181 ... P97461 36517592
    79 7cpu:SF (2.82) BS02 MG ? GO:0002181 ... P97461 36517592
    80 7cpu:SG (2.82) BS01 rna ? GO:0000082 ... P62754 36517592
    81 7cpu:SH (2.82) BS01 rna ? GO:0001843 ... P62082 36517592
    82 7cpu:SI (2.82) BS01 rna ? GO:0002181 ... P62242 36517592
    83 7cpu:SJ (2.82) BS01 rna ? GO:0002181 ... Q6ZWN5 36517592
    84 7cpu:SK (2.82) BS01 rna ? GO:0002181 ... P63325 36517592
    85 7cpu:SL (2.82) BS01 rna ? GO:0002181 ... P62281 36517592
    86 7cpu:SN (2.82) BS01 rna ? GO:0002181 ... P62301 36517592
    87 7cpu:SN (2.82) BS02 rna ? GO:0002181 ... P62301 36517592
    88 7cpu:SO (2.82) BS01 rna ? GO:0000028 ... P62264 36517592
    89 7cpu:SP (2.82) BS01 rna ? GO:0000028 ... P62843 36517592
    90 7cpu:SQ (2.82) BS01 rna ? GO:0002181 ... P14131 36517592
    91 7cpu:SR (2.82) BS01 rna ? GO:0002181 ... P63276 36517592
    92 7cpu:SS (2.82) BS01 rna ? GO:0002181 ... P62270 36517592
    93 7cpu:ST (2.82) BS01 rna ? GO:0002181 ... Q9CZX8 36517592
    94 7cpu:SU (2.82) BS01 rna ? GO:0002181 ... P60867 36517592
    95 7cpu:SW (2.82) BS01 rna ? GO:0002181 ... P62245 36517592
    96 7cpu:SX (2.82) BS01 rna ? GO:0002181 ... P62267 36517592
    97 7cpu:SY (2.82) BS01 rna ? GO:0002181 ... P62849 36517592
    98 7cpu:SZ (2.82) BS01 rna ? GO:0002181 ... P62852 36517592
    99 7cpu:Sa (2.82) BS01 rna ? GO:0002181 ... P62855 36517592
    100 7cpu:Sa (2.82) BS02 ZN ? GO:0002181 ... P62855 36517592
    101 7cpu:Sb (2.82) BS01 rna ? GO:0003735 ... Q6ZWU9 36517592
    102 7cpu:Sc (2.82) BS01 rna ? GO:0002181 ... P62858 36517592
    103 7cpu:Sd (2.82) BS01 rna ? GO:0002181 ... P62274 36517592
    104 7cpu:Sd (2.82) BS02 ZN ? GO:0002181 ... P62274 36517592
    105 7cpu:Sd (2.82) BS03 MG ? GO:0002181 ... P62274 36517592
    106 7cpu:Se (2.82) BS01 rna ? GO:0002181 ... P62862 36517592
    107 7cpu:Sg (2.82) BS01 rna ? GO:0001891 ... P68040 36517592
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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