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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7b9v:A (2.8) BS01 rna ? GO:0000244 ... P33334 33705709
    2 7b9v:A (2.8) BS02 rna ? GO:0000244 ... P33334 33705709
    3 7b9v:A (2.8) BS03 rna ? GO:0000244 ... P33334 33705709
    4 7b9v:A (2.8) BS04 rna ? GO:0000244 ... P33334 33705709
    5 7b9v:A (2.8) BS05 rna ? GO:0000244 ... P33334 33705709
    6 7b9v:A (2.8) BS06 KGN ? GO:0000244 ... P33334 33705709
    7 7b9v:C (2.8) BS01 rna ? GO:0003924 ... N/A 33705709
    8 7b9v:C (2.8) BS02 MG ? GO:0003924 ... N/A 33705709
    9 7b9v:C (2.8) BS03 GTP ? GO:0003924 ... N/A 33705709
    10 7b9v:D (2.8) BS01 rna N/A GO:0000398 ... N/A 33705709
    11 7b9v:D (2.8) BS02 rna N/A GO:0000398 ... N/A 33705709
    12 7b9v:D (2.8) BS03 rna N/A GO:0000398 ... N/A 33705709
    13 7b9v:D (2.8) BS04 ZN N/A GO:0000398 ... N/A 33705709
    14 7b9v:F (2.8) BS01 rna N/A N/A N/A 33705709
    15 7b9v:F (2.8) BS02 rna N/A N/A N/A 33705709
    16 7b9v:G (2.8) BS01 rna N/A GO:0000350 ... N/A 33705709
    17 7b9v:G (2.8) BS02 rna N/A GO:0000350 ... N/A 33705709
    18 7b9v:G (2.8) BS03 rna N/A GO:0000350 ... N/A 33705709
    19 7b9v:H (2.8) BS01 rna N/A GO:0003723 ... N/A 33705709
    20 7b9v:K (2.8) BS01 rna N/A GO:0000398 ... N/A 33705709
    21 7b9v:K (2.8) BS02 rna N/A GO:0000398 ... N/A 33705709
    22 7b9v:K (2.8) BS03 rna N/A GO:0000398 ... N/A 33705709
    23 7b9v:L (2.8) BS01 rna ? GO:0005634 ... N/A 33705709
    24 7b9v:L (2.8) BS02 rna ? GO:0005634 ... N/A 33705709
    25 7b9v:L (2.8) BS03 ZN ? GO:0005634 ... N/A 33705709
    26 7b9v:L (2.8) BS04 ZN ? GO:0005634 ... N/A 33705709
    27 7b9v:L (2.8) BS05 ZN ? GO:0005634 ... N/A 33705709
    28 7b9v:M (2.8) BS01 rna ? GO:0003676 ... N/A 33705709
    29 7b9v:M (2.8) BS02 rna ? GO:0003676 ... N/A 33705709
    30 7b9v:M (2.8) BS03 rna ? GO:0003676 ... N/A 33705709
    31 7b9v:M (2.8) BS04 ZN ? GO:0003676 ... N/A 33705709
    32 7b9v:N (2.8) BS01 rna N/A GO:0003723 ... N/A 33705709
    33 7b9v:N (2.8) BS02 rna N/A GO:0003723 ... N/A 33705709
    34 7b9v:N (2.8) BS03 ZN N/A GO:0003723 ... N/A 33705709
    35 7b9v:N (2.8) BS04 ZN N/A GO:0003723 ... N/A 33705709
    36 7b9v:O (2.8) BS01 rna N/A GO:0000398 ... N/A 33705709
    37 7b9v:P (2.8) BS01 rna N/A GO:0000398 ... N/A 33705709
    38 7b9v:P (2.8) BS02 rna N/A GO:0000398 ... N/A 33705709
    39 7b9v:P (2.8) BS03 rna N/A GO:0000398 ... N/A 33705709
    40 7b9v:Q (2.8) BS01 rna 3.6.4.13 GO:0003676 ... N/A 33705709
    41 7b9v:R (2.8) BS01 rna ? N/A N/A 33705709
    42 7b9v:R (2.8) BS02 rna ? N/A N/A 33705709
    43 7b9v:S (2.8) BS01 rna ? GO:0000398 ... N/A 33705709
    44 7b9v:W (2.8) BS01 rna ? N/A N/A 33705709
    45 7b9v:Y (2.8) BS01 rna ? GO:0003676 ... N/A 33705709
    46 7b9v:b (2.8) BS01 rna ? GO:0000243 ... P40018 33705709
    47 7b9v:c (2.8) BS01 ZN N/A GO:0000398 ... N/A 33705709
    48 7b9v:d (2.8) BS01 rna ? GO:0000243 ... P43321 33705709
    49 7b9v:e (2.8) BS01 rna ? GO:0000243 ... Q12330 33705709
    50 7b9v:f (2.8) BS01 rna ? GO:0000243 ... P54999 33705709
    51 7b9v:g (2.8) BS01 rna ? GO:0000243 ... P40204 33705709
    52 7b9v:h (2.8) BS01 rna ? GO:0000243 ... Q02260 33705709
    53 7b9v:j (2.8) BS01 rna ? GO:0000243 ... Q06217 33705709
    54 7b9v:k (2.8) BS01 rna ? GO:0000243 ... P40018 33705709
    55 7b9v:l (2.8) BS01 rna ? GO:0000243 ... Q02260 33705709
    56 7b9v:m (2.8) BS01 rna ? GO:0000243 ... Q06217 33705709
    57 7b9v:n (2.8) BS01 rna ? GO:0000243 ... P43321 33705709
    58 7b9v:o (2.8) BS01 rna N/A GO:0000398 ... N/A 33705709
    59 7b9v:p (2.8) BS01 rna ? GO:0000243 ... Q12330 33705709
    60 7b9v:q (2.8) BS01 rna ? GO:0000243 ... P54999 33705709
    61 7b9v:r (2.8) BS01 rna ? GO:0000243 ... P40204 33705709
    62 7b9v:y (2.8) BS01 rna N/A N/A N/A 33705709
    63 7b9v:y (2.8) BS02 rna N/A N/A N/A 33705709
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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