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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7acr:5 (3.44) BS01 rna ? GO:0003723 ... A0A330BLJ1 34389707
    2 7acr:5 (3.44) BS02 rna ? GO:0003723 ... A0A330BLJ1 34389707
    3 7acr:5 (3.44) BS03 rna ? GO:0003723 ... A0A330BLJ1 34389707
    4 7acr:A (3.44) BS01 rna ? GO:0003735 ... P0A7L8 34389707
    5 7acr:A (3.44) BS02 rna ? GO:0003735 ... P0A7L8 34389707
    6 7acr:B (3.44) BS01 rna ? GO:0000027 ... P60422 34389707
    7 7acr:B (3.44) BS02 rna ? GO:0000027 ... P60422 34389707
    8 7acr:C (3.44) BS01 rna ? GO:0000027 ... P60438 34389707
    9 7acr:D (3.44) BS01 rna ? GO:0001070 ... P60723 34389707
    10 7acr:E (3.44) BS01 rna ? GO:0000027 ... P62399 34389707
    11 7acr:E (3.44) BS02 rna ? GO:0000027 ... P62399 34389707
    12 7acr:E (3.44) BS03 rna ? GO:0000027 ... P62399 34389707
    13 7acr:F (3.44) BS01 rna ? GO:0000027 ... P0AG55 34389707
    14 7acr:G (3.44) BS01 rna ? GO:0002181 ... P0A7R1 34389707
    15 7acr:J (3.44) BS01 rna ? GO:0002181 ... P0AA10 34389707
    16 7acr:K (3.44) BS01 rna ? GO:0002181 ... P0ADY3 34389707
    17 7acr:K (3.44) BS02 rna ? GO:0002181 ... P0ADY3 34389707
    18 7acr:L (3.44) BS01 rna ? GO:0002181 ... P02413 34389707
    19 7acr:M (3.44) BS01 rna ? GO:0000027 ... P0ADY7 34389707
    20 7acr:M (3.44) BS02 rna ? GO:0000027 ... P0ADY7 34389707
    21 7acr:N (3.44) BS01 rna ? GO:0000027 ... P0AG44 34389707
    22 7acr:O (3.44) BS01 rna ? GO:0002181 ... P0C018 34389707
    23 7acr:O (3.44) BS02 rna ? GO:0002181 ... P0C018 34389707
    24 7acr:O (3.44) BS03 MG ? GO:0002181 ... P0C018 34389707
    25 7acr:P (3.44) BS01 rna ? GO:0000027 ... P0A7K6 34389707
    26 7acr:P (3.44) BS02 rna ? GO:0000027 ... P0A7K6 34389707
    27 7acr:Q (3.44) BS01 rna ? GO:0000027 ... P0A7L3 34389707
    28 7acr:R (3.44) BS01 rna ? GO:0002181 ... P0AG48 34389707
    29 7acr:S (3.44) BS01 rna ? GO:0002181 ... P61175 34389707
    30 7acr:T (3.44) BS01 rna ? GO:0000027 ... P0ADZ0 34389707
    31 7acr:U (3.44) BS01 rna ? GO:0000027 ... P60624 34389707
    32 7acr:V (3.44) BS01 rna ? GO:0000027 ... P68919 34389707
    33 7acr:X (3.44) BS01 rna ? GO:0000027 ... P0A7M2 34389707
    34 7acr:Y (3.44) BS01 rna ? GO:0000027 ... P0A7M6 34389707
    35 7acr:Z (3.44) BS01 rna ? GO:0000027 ... P0AG51 34389707
    36 7acr:a (3.44) BS01 rna ? GO:0002181 ... P0A7M9 34389707
    37 7acr:a (3.44) BS02 ZN ? GO:0002181 ... P0A7M9 34389707
    38 7acr:b (3.44) BS01 rna ? GO:0000027 ... P0A7N4 34389707
    39 7acr:c (3.44) BS01 rna ? GO:0000027 ... P0A7N9 34389707
    40 7acr:d (3.44) BS01 rna ? GO:0002181 ... P0A7P5 34389707
    41 7acr:e (3.44) BS01 rna ? GO:0002181 ... P0A7Q1 34389707
    42 7acr:f (3.44) BS01 rna ? GO:0002181 ... P0A7Q6 34389707
    43 7acr:f (3.44) BS02 ZN ? GO:0002181 ... P0A7Q6 34389707
    44 7acr:g (3.44) BS01 rna ? GO:0000028 ... P0A7V0 34389707
    45 7acr:g (3.44) BS02 rna ? GO:0000028 ... P0A7V0 34389707
    46 7acr:h (3.44) BS01 rna ? GO:0000028 ... P0A7V3 34389707
    47 7acr:h (3.44) BS02 rna ? GO:0000028 ... P0A7V3 34389707
    48 7acr:h (3.44) BS03 MG ? GO:0000028 ... P0A7V3 34389707
    49 7acr:i (3.44) BS01 rna ? GO:0000028 ... P0A7V8 34389707
    50 7acr:i (3.44) BS02 rna ? GO:0000028 ... P0A7V8 34389707
    51 7acr:j (3.44) BS01 rna ? GO:0000028 ... P0A7W1 34389707
    52 7acr:j (3.44) BS02 rna ? GO:0000028 ... P0A7W1 34389707
    53 7acr:k (3.44) BS01 rna ? GO:0003735 ... P02358 34389707
    54 7acr:l (3.44) BS01 rna ? GO:0003723 ... P02359 34389707
    55 7acr:m (3.44) BS01 rna ? GO:0000028 ... P0A7W7 34389707
    56 7acr:n (3.44) BS01 rna ? GO:0000049 ... P0A7X3 34389707
    57 7acr:o (3.44) BS01 rna ? GO:0000049 ... P0A7R5 34389707
    58 7acr:p (3.44) BS01 rna ? GO:0002181 ... P0A7R9 34389707
    59 7acr:q (3.44) BS01 rna ? GO:0000049 ... P0A7S3 34389707
    60 7acr:r (3.44) BS01 rna ? GO:0000049 ... P0A7S9 34389707
    61 7acr:s (3.44) BS01 rna ? GO:0000028 ... P0AG59 34389707
    62 7acr:t (3.44) BS01 rna ? GO:0000028 ... P0ADZ4 34389707
    63 7acr:t (3.44) BS02 rna ? GO:0000028 ... P0ADZ4 34389707
    64 7acr:u (3.44) BS01 rna ? GO:0000028 ... P0A7T3 34389707
    65 7acr:v (3.44) BS01 rna ? GO:0000028 ... P0AG63 34389707
    66 7acr:w (3.44) BS01 rna ? GO:0003735 ... P0A7T7 34389707
    67 7acr:x (3.44) BS01 rna ? GO:0000028 ... P0A7U3 34389707
    68 7acr:x (3.44) BS02 rna ? GO:0000028 ... P0A7U3 34389707
    69 7acr:y (3.44) BS01 rna ? GO:0000028 ... P0A7U7 34389707
    70 7acr:z (3.44) BS01 rna ? GO:0000028 ... P68679 34389707
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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