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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ac7:5 (3.08) BS01 rna ? GO:0003723 ... P0A832 34389707
    2 7ac7:5 (3.08) BS02 rna ? GO:0003723 ... P0A832 34389707
    3 7ac7:A (3.08) BS01 rna ? GO:0000027 ... P0A7L8 34389707
    4 7ac7:A (3.08) BS02 rna ? GO:0000027 ... P0A7L8 34389707
    5 7ac7:B (3.08) BS01 rna ? GO:0000027 ... P60422 34389707
    6 7ac7:B (3.08) BS02 rna ? GO:0000027 ... P60422 34389707
    7 7ac7:C (3.08) BS01 rna ? GO:0000027 ... P60438 34389707
    8 7ac7:D (3.08) BS01 rna ? GO:0001070 ... P60723 34389707
    9 7ac7:E (3.08) BS01 rna ? GO:0000027 ... P62399 34389707
    10 7ac7:E (3.08) BS02 rna ? GO:0000027 ... P62399 34389707
    11 7ac7:E (3.08) BS03 rna ? GO:0000027 ... P62399 34389707
    12 7ac7:F (3.08) BS01 rna ? GO:0000027 ... P0AG55 34389707
    13 7ac7:G (3.08) BS01 rna ? GO:0002181 ... P0A7R1 34389707
    14 7ac7:H (3.08) BS01 rna ? GO:0003735 ... P0A7J3 34389707
    15 7ac7:J (3.08) BS01 rna ? GO:0002181 ... P0AA10 34389707
    16 7ac7:K (3.08) BS01 rna ? GO:0002181 ... P0ADY3 34389707
    17 7ac7:K (3.08) BS02 rna ? GO:0002181 ... P0ADY3 34389707
    18 7ac7:L (3.08) BS01 rna ? GO:0002181 ... P02413 34389707
    19 7ac7:M (3.08) BS01 rna ? GO:0000027 ... P0ADY7 34389707
    20 7ac7:M (3.08) BS02 rna ? GO:0000027 ... P0ADY7 34389707
    21 7ac7:M (3.08) BS03 rna ? GO:0000027 ... P0ADY7 34389707
    22 7ac7:N (3.08) BS01 rna ? GO:0000027 ... P0AG44 34389707
    23 7ac7:O (3.08) BS01 rna ? GO:0002181 ... P0C018 34389707
    24 7ac7:O (3.08) BS02 rna ? GO:0002181 ... P0C018 34389707
    25 7ac7:P (3.08) BS01 rna ? GO:0000027 ... P0A7K6 34389707
    26 7ac7:P (3.08) BS02 rna ? GO:0000027 ... P0A7K6 34389707
    27 7ac7:Q (3.08) BS01 rna ? GO:0000027 ... P0A7L3 34389707
    28 7ac7:R (3.08) BS01 rna ? GO:0002181 ... P0AG48 34389707
    29 7ac7:S (3.08) BS01 rna ? GO:0002181 ... P61175 34389707
    30 7ac7:T (3.08) BS01 rna ? GO:0000027 ... P0ADZ0 34389707
    31 7ac7:U (3.08) BS01 rna ? GO:0000027 ... P60624 34389707
    32 7ac7:V (3.08) BS01 rna ? GO:0000027 ... P68919 34389707
    33 7ac7:X (3.08) BS01 rna ? GO:0000027 ... P0A7M2 34389707
    34 7ac7:Y (3.08) BS01 rna ? GO:0000027 ... P0A7M6 34389707
    35 7ac7:Z (3.08) BS01 rna ? GO:0000027 ... P0AG51 34389707
    36 7ac7:Z (3.08) BS02 rna ? GO:0000027 ... P0AG51 34389707
    37 7ac7:a (3.08) BS01 rna ? GO:0002181 ... P0A7M9 34389707
    38 7ac7:a (3.08) BS02 rna ? GO:0002181 ... P0A7M9 34389707
    39 7ac7:a (3.08) BS03 ZN ? GO:0002181 ... P0A7M9 34389707
    40 7ac7:b (3.08) BS01 rna ? GO:0000027 ... P0A7N4 34389707
    41 7ac7:c (3.08) BS01 rna ? GO:0000027 ... P0A7N9 34389707
    42 7ac7:d (3.08) BS01 rna ? GO:0002181 ... P0A7P5 34389707
    43 7ac7:e (3.08) BS01 rna ? GO:0002181 ... P0A7Q1 34389707
    44 7ac7:f (3.08) BS01 rna ? GO:0002181 ... P0A7Q6 34389707
    45 7ac7:f (3.08) BS02 ZN ? GO:0002181 ... P0A7Q6 34389707
    46 7ac7:g (3.08) BS01 rna ? GO:0000028 ... P0A7V0 34389707
    47 7ac7:h (3.08) BS01 rna ? GO:0003676 ... P0A7V3 34389707
    48 7ac7:h (3.08) BS02 rna ? GO:0003676 ... P0A7V3 34389707
    49 7ac7:i (3.08) BS01 rna ? GO:0000028 ... P0A7V8 34389707
    50 7ac7:j (3.08) BS01 rna ? GO:0000028 ... P0A7W1 34389707
    51 7ac7:k (3.08) BS01 rna ? GO:0003735 ... P02358 34389707
    52 7ac7:l (3.08) BS01 rna ? GO:0003723 ... P02359 34389707
    53 7ac7:l (3.08) BS02 rna ? GO:0003723 ... P02359 34389707
    54 7ac7:m (3.08) BS01 rna ? GO:0000028 ... P0A7W7 34389707
    55 7ac7:n (3.08) BS01 rna ? GO:0000049 ... P0A7X3 34389707
    56 7ac7:o (3.08) BS01 rna ? GO:0000049 ... P0A7R5 34389707
    57 7ac7:p (3.08) BS01 rna ? GO:0002181 ... P0A7R9 34389707
    58 7ac7:q (3.08) BS01 rna ? GO:0000049 ... P0A7S3 34389707
    59 7ac7:r (3.08) BS01 rna ? GO:0000049 ... P0A7S9 34389707
    60 7ac7:r (3.08) BS02 rna ? GO:0000049 ... P0A7S9 34389707
    61 7ac7:s (3.08) BS01 rna ? GO:0000028 ... P0AG59 34389707
    62 7ac7:t (3.08) BS01 rna ? GO:0000028 ... P0ADZ4 34389707
    63 7ac7:t (3.08) BS02 rna ? GO:0000028 ... P0ADZ4 34389707
    64 7ac7:u (3.08) BS01 rna ? GO:0000028 ... P0A7T3 34389707
    65 7ac7:v (3.08) BS01 rna ? GO:0000028 ... P0AG63 34389707
    66 7ac7:w (3.08) BS01 rna ? GO:0003735 ... P0A7T7 34389707
    67 7ac7:x (3.08) BS01 rna ? GO:0003723 ... P0A7U3 34389707
    68 7ac7:y (3.08) BS01 rna ? GO:0000028 ... P0A7U7 34389707
    69 7ac7:z (3.08) BS01 rna ? GO:0000028 ... P68679 34389707
    70 7ac7:z (3.08) BS02 rna ? GO:0000028 ... P68679 34389707
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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