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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7abi:4 (8.0) BS01 rna ? GO:0000375 ... Q12874 33243851
    2 7abi:A (8.0) BS01 rna ? GO:0000244 ... Q6P2Q9 33243851
    3 7abi:A (8.0) BS02 rna ? GO:0000244 ... Q6P2Q9 33243851
    4 7abi:A (8.0) BS03 rna ? GO:0000244 ... Q6P2Q9 33243851
    5 7abi:A (8.0) BS04 rna ? GO:0000244 ... Q6P2Q9 33243851
    6 7abi:B (8.0) BS01 rna ? GO:0000398 ... P08579 33243851
    7 7abi:F (8.0) BS01 rna ? GO:0000245 ... Q15428 33243851
    8 7abi:K (8.0) BS01 rna ? GO:0000398 ... P55081 33243851
    9 7abi:K (8.0) BS02 rna ? GO:0000398 ... P55081 33243851
    10 7abi:L (8.0) BS01 rna ? GO:0000077 ... Q99459 33243851
    11 7abi:N (8.0) BS01 rna ? GO:0000398 ... Q96NC0 33243851
    12 7abi:O (8.0) BS01 rna ? GO:0000245 ... Q9BZJ0 33243851
    13 7abi:P (8.0) BS01 rna ? GO:0000398 ... Q9NW64 33243851
    14 7abi:P (8.0) BS02 rna ? GO:0000398 ... Q9NW64 33243851
    15 7abi:Q (8.0) BS01 rna ? GO:0000398 ... P41223 33243851
    16 7abi:T (8.0) BS01 rna ? GO:0000398 ... Q13435 33243851
    17 7abi:W (8.0) BS01 rna ? GO:0000398 ... P09661 33243851
    18 7abi:a (8.0) BS01 rna ? GO:0000245 ... P62316 33243851
    19 7abi:b (8.0) BS01 rna ? GO:0000387 ... P62306 33243851
    20 7abi:f (8.0) BS01 rna ? GO:0000387 ... P14678 33243851
    21 7abi:g (8.0) BS01 rna ? GO:0000243 ... P62314 33243851
    22 7abi:h (8.0) BS01 rna ? GO:0000245 ... P62316 33243851
    23 7abi:j (8.0) BS01 rna ? GO:0000245 ... P62304 33243851
    24 7abi:k (8.0) BS01 rna ? GO:0000245 ... P62308 33243851
    25 7abi:l (8.0) BS01 rna ? GO:0000243 ... P62318 33243851
    26 7abi:m (8.0) BS01 rna ? GO:0000387 ... P14678 33243851
    27 7abi:n (8.0) BS01 rna ? GO:0000243 ... P62314 33243851
    28 7abi:r (8.0) BS01 GTP ? GO:0000398 ... Q15029 33243851
    29 7abi:u (8.0) BS01 rna ? GO:0000245 ... O75533 33243851
    30 7abi:u (8.0) BS02 rna ? GO:0000245 ... O75533 33243851
    31 7abi:v (8.0) BS01 peptide ? GO:0000122 ... Q13573 33243851
    32 7abi:y (8.0) BS01 rna ? GO:0000398 ... Q7RTV0 33243851
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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