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BioLiP
Download all results in tab-seperated text for 86 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7a5g:03 (4.33) BS01 rna ? GO:0003723 ... Q9BYC8 33243891
    2 7a5g:03 (4.33) BS02 ZN ? GO:0003723 ... Q9BYC8 33243891
    3 7a5g:13 (4.33) BS01 rna ? GO:0003735 ... O75394 33243891
    4 7a5g:23 (4.33) BS01 rna ? GO:0003735 ... Q9BQ48 33243891
    5 7a5g:33 (4.33) BS01 rna ? GO:0003735 ... Q9NZE8 33243891
    6 7a5g:43 (4.33) BS01 rna ? GO:0003735 ... Q9P0J6 33243891
    7 7a5g:43 (4.33) BS02 ZN ? GO:0003735 ... Q9P0J6 33243891
    8 7a5g:53 (4.33) BS01 rna ? GO:0003723 ... Q9BZE1 33243891
    9 7a5g:63 (4.33) BS01 rna ? GO:0005515 ... Q96DV4 33243891
    10 7a5g:63 (4.33) BS02 rna ? GO:0005515 ... Q96DV4 33243891
    11 7a5g:93 (4.33) BS01 rna ? GO:0003723 ... Q8IXM3 33243891
    12 7a5g:A (4.33) BS01 rna ? GO:0003723 ... Q9NQ50 33243891
    13 7a5g:A (4.33) BS02 rna ? GO:0003723 ... Q9NQ50 33243891
    14 7a5g:B6 (4.33) BS01 rna ? GO:0003735 ... Q9Y399 33243891
    15 7a5g:B6 (4.33) BS02 ZN ? GO:0003735 ... Q9Y399 33243891
    16 7a5g:C6 (4.33) BS01 rna ? GO:0003723 ... Q96EL2 33243891
    17 7a5g:D (4.33) BS01 rna ? GO:0003723 ... Q9BYD2 33243891
    18 7a5g:D3 (4.33) BS01 rna ? GO:0003723 ... Q5T653 33243891
    19 7a5g:D6 (4.33) BS01 rna ? GO:0003723 ... P82675 33243891
    20 7a5g:E3 (4.33) BS01 rna ? GO:0003723 ... P09001 33243891
    21 7a5g:E6 (4.33) BS01 rna ? GO:0003735 ... P82932 33243891
    22 7a5g:F3 (4.33) BS01 rna ? GO:0003723 ... Q9BYD3 33243891
    23 7a5g:F6 (4.33) BS01 rna ? GO:0000028 ... Q9Y2R9 33243891
    24 7a5g:F6 (4.33) BS02 rna ? GO:0000028 ... Q9Y2R9 33243891
    25 7a5g:F6 (4.33) BS03 rna ? GO:0000028 ... Q9Y2R9 33243891
    26 7a5g:G6 (4.33) BS01 rna ? GO:0003723 ... P82933 33243891
    27 7a5g:H3 (4.33) BS01 rna ? GO:0003723 ... Q9BYD2 33243891
    28 7a5g:H6 (4.33) BS01 rna ? GO:0003674 ... P82664 33243891
    29 7a5g:I3 (4.33) BS01 rna ? GO:0003723 ... Q7Z7H8 33243891
    30 7a5g:I3 (4.33) BS02 peptide ? GO:0003723 ... Q7Z7H8 33243891
    31 7a5g:I6 (4.33) BS01 rna ? GO:0003723 ... P82912 33243891
    32 7a5g:J3 (4.33) BS01 rna ? GO:0003723 ... Q9Y3B7 33243891
    33 7a5g:J6 (4.33) BS01 rna ? GO:0003723 ... O15235 33243891
    34 7a5g:K3 (4.33) BS01 rna ? GO:0003723 ... Q9BYD1 33243891
    35 7a5g:K6 (4.33) BS01 rna ? GO:0003723 ... O60783 33243891
    36 7a5g:L3 (4.33) BS01 rna ? GO:0003723 ... Q6P1L8 33243891
    37 7a5g:L6 (4.33) BS01 rna ? GO:0003723 ... P82914 33243891
    38 7a5g:M3 (4.33) BS01 rna ? GO:0003723 ... Q9P015 33243891
    39 7a5g:M6 (4.33) BS01 rna ? GO:0003735 ... Q9Y3D3 33243891
    40 7a5g:N3 (4.33) BS01 rna ? GO:0003735 ... Q9NX20 33243891
    41 7a5g:N6 (4.33) BS01 rna ? GO:0003735 ... Q9Y2R5 33243891
    42 7a5g:O3 (4.33) BS01 rna ? GO:0003735 ... Q9NRX2 33243891
    43 7a5g:O6 (4.33) BS01 rna ? GO:0003735 ... Q9Y676 33243891
    44 7a5g:O6 (4.33) BS02 ZN ? GO:0003735 ... Q9Y676 33243891
    45 7a5g:P3 (4.33) BS01 rna ? GO:0003723 ... Q9H0U6 33243891
    46 7a5g:P6 (4.33) BS01 rna ? GO:0003735 ... Q9Y3D5 33243891
    47 7a5g:Q3 (4.33) BS01 rna ? GO:0003735 ... P49406 33243891
    48 7a5g:Q6 (4.33) BS01 rna ? GO:0003723 ... P82921 33243891
    49 7a5g:R3 (4.33) BS01 rna ? GO:0003723 ... Q9BYC9 33243891
    50 7a5g:S3 (4.33) BS01 rna ? GO:0003723 ... Q7Z2W9 33243891
    51 7a5g:S6 (4.33) BS01 rna ? GO:0003723 ... Q9Y3D9 33243891
    52 7a5g:T3 (4.33) BS01 rna ? GO:0003723 ... Q9NWU5 33243891
    53 7a5g:T6 (4.33) BS01 rna ? GO:0003735 ... P82663 33243891
    54 7a5g:U3 (4.33) BS01 rna ? GO:0001650 ... Q16540 33243891
    55 7a5g:U6 (4.33) BS01 rna ? GO:0003723 ... Q9BYN8 33243891
    56 7a5g:V3 (4.33) BS01 rna ? GO:0003723 ... Q96A35 33243891
    57 7a5g:V6 (4.33) BS01 rna ? GO:0000049 ... Q92552 33243891
    58 7a5g:W3 (4.33) BS01 rna ? GO:0003723 ... Q9P0M9 33243891
    59 7a5g:X3 (4.33) BS01 rna ? GO:0003723 ... Q13084 33243891
    60 7a5g:X3 (4.33) BS02 rna ? GO:0003723 ... Q13084 33243891
    61 7a5g:X6 (4.33) BS01 rna ? GO:0003723 ... P51398 33243891
    62 7a5g:X6 (4.33) BS02 GDP ? GO:0003723 ... P51398 33243891
    63 7a5g:Y3 (4.33) BS01 rna ? GO:0003674 ... Q9HD33 33243891
    64 7a5g:Z (4.33) BS01 rna ? GO:0003723 ... P49411 33243891
    65 7a5g:Z (4.33) BS02 rna ? GO:0003723 ... P49411 33243891
    66 7a5g:Z3 (4.33) BS01 rna ? GO:0003735 ... Q8TCC3 33243891
    67 7a5g:Z6 (4.33) BS01 rna ? GO:0003735 ... Q9Y291 33243891
    68 7a5g:a3 (4.33) BS01 rna ? GO:0003723 ... Q9Y6G3 33243891
    69 7a5g:a6 (4.33) BS01 rna ? GO:0003735 ... P82930 33243891
    70 7a5g:b3 (4.33) BS01 rna ? GO:0003723 ... Q8N983 33243891
    71 7a5g:c3 (4.33) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 33243891
    72 7a5g:c6 (4.33) BS01 rna ? GO:0001650 ... Q96BP2 33243891
    73 7a5g:d6 (4.33) BS01 rna ? GO:0005515 ... Q9NWT8 33243891
    74 7a5g:f3 (4.33) BS01 rna ? GO:0005515 ... Q96GC5 33243891
    75 7a5g:f3 (4.33) BS02 rna ? GO:0005515 ... Q96GC5 33243891
    76 7a5g:g3 (4.33) BS01 rna ? GO:0003735 ... Q13405 33243891
    77 7a5g:i3 (4.33) BS01 rna ? GO:0003735 ... Q4U2R6 33243891
    78 7a5g:j3 (4.33) BS01 rna ? GO:0003735 ... Q86TS9 33243891
    79 7a5g:n (4.33) BS01 rna ? GO:0000049 ... P27150 33243891
    80 7a5g:n (4.33) BS02 rna ? GO:0000049 ... P27150 33243891
    81 7a5g:n (4.33) BS03 MG ? GO:0000049 ... P27150 33243891
    82 7a5g:o3 (4.33) BS01 rna ? GO:0003735 ... Q9BQC6 33243891
    83 7a5g:q3 (4.33) BS01 rna ? GO:0005515 ... Q8TAE8 33243891
    84 7a5g:r3 (4.33) BS01 rna ? GO:0003735 ... Q9NVS2 33243891
    85 7a5g:r3 (4.33) BS02 ZN ? GO:0003735 ... Q9NVS2 33243891
    86 7a5g:s3 (4.33) BS01 rna ? GO:0003723 ... Q9NP92 33243891
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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